HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:51.6 nTPM
HPA Brain:39.8 nTPM
GTEx:51.6 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:108.7 nTPM
Allen mouse:8.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016579Antibody HPA059374
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Hippocampus
nTPM: 37.2
1898 Male, age 80, left hemisphere 46.5
2148 Female, age 91, left hemisphere 37.0
1855 Male, age 76, left hemisphere 36.8
2621 Female, age 67, right hemisphere 36.5
1911 Female, age 85, right hemisphere 34.6
2529 Female, age 94, left hemisphere 31.9
Dentate gyrus
nTPM: 34.8
2530 Female, age 94, left hemisphere 36.9
1927 Female, age 91, both hemispheres 35.7
2531 Female, age 67, both hemispheres 35.3
2528 Male, age 74, both hemispheres 35.0
2010 Male, age 76, both hemispheres 33.5
2246 Female, age 85, both hemispheres 32.4
Entorhinal gyrus
nTPM: 36.8
2613 Female, age 94, left hemisphere 40.8
2764 Male, age 80, right hemisphere 40.3
1787 Male, age 76, left hemisphere 36.9
2117 Female, age 91, right hemisphere 35.9
1938 Female, age 85, left hemisphere 35.3
2686 Male, age 75, right hemisphere 31.8
Hippocampus, CA1
nTPM: 37.7
2749 Male, age 80, left hemisphere 55.6
1873 Female, age 85, both hemispheres 35.1
2045 Male, age 76, both hemispheres 35.1
2527 Male, age 74, both hemispheres 34.3
2082 Female, age 91, right hemisphere 28.5
Hippocampus, CA2
nTPM: 37.3
1963 Male, age 80, left hemisphere 47.0
1892 Male, age 76, both hemispheres 43.8
2437 Female, age 94, left hemisphere 39.3
2249 Male, age 74, both hemispheres 33.7
1940 Female, age 85, left hemisphere 30.6
2113 Female, age 91, right hemisphere 29.2
Hippocampus, CA3
nTPM: 39.8
2861 Female, age 67, both hemispheres 44.4
2137 Male, age 80, left hemisphere 44.0
2620 Female, age 94, left hemisphere 40.6
1867 Male, age 76, both hemispheres 40.4
2436 Male, age 74, both hemispheres 35.8
1891 Female, age 85, both hemispheres 33.7
Parahippocampal cortex
nTPM: 31.5
1850 Male, age 80, both hemispheres 33.8
1933 Female, age 85, both hemispheres 33.5
2622 Female, age 67, right hemisphere 33.1
2692 Male, age 74, both hemispheres 32.4
2245 Female, age 91, both hemispheres 31.9
2018 Male, age 76, both hemispheres 31.4
2532 Female, age 72, left hemisphere 31.3
1990 Female, age 91, right hemisphere 30.0
2250 Female, age 67, right hemisphere 29.7
2693 Female, age 94, both hemispheres 27.7
Perirhinal gyrus
nTPM: 37.2
1794 Male, age 80, right hemisphere 40.6
1847 Female, age 91, left hemisphere 39.6
2521 Female, age 94, right hemisphere 39.0
2848 Male, age 76, right hemisphere 33.9
1841 Female, age 85, right hemisphere 32.5
Subiculum
nTPM: 37.6
2438 Female, age 94, left hemisphere 43.4
1977 Female, age 85, both hemispheres 40.0
1901 Male, age 80, both hemispheres 39.1
2619 Male, age 74, both hemispheres 35.2
2042 Male, age 76, both hemispheres 34.3
2729 Female, age 91, right hemisphere 33.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.6
Samples: 197

Max nTPM: 105.1
Min nTPM: 19.9
Std nTPM: 13.3
Median nTPM: 50.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 105.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 96.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 82.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 80.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 79.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 79.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 77.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 76.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 76.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 74.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 74.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.9
FF:10169-103B7 60 years, female 31.1
FF:10153-102I9 76 years, female 26.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Subiculum
nTPM: 24.8
Samples: 4

Max nTPM: 33.2
Min nTPM: 20.3
Sample A Female 33.2
Sample B Female 22.4
Sample C Male 23.3
Sample D Male 20.3
Dorsal hippocampus
nTPM: 29.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 22.3
Sample A Female 37.1
Sample B Female 29.1
Sample C Male 28.2
Sample D Male 22.3
Entorhinal cortex
nTPM: 25.2
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.2
Sample A Female 27.5
Sample B Female 23.8
Sample C Male 27.2
Sample D Male 22.2
Ventral hippocampus
nTPM: 28.2
Samples: 4

Max nTPM: 32.8
Min nTPM: 20.9
Sample A Female 27.7
Sample B Female 20.9
Sample C Male 32.8
Sample D Male 31.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 108.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 107.7
Samples: 4

Max nTPM: 114.8
Min nTPM: 99.5
Sample A Male 99.5
Sample B Male 108.8
Sample C Female 114.8
Sample D Female 107.8
Hippocampal formation
nTPM: 108.7
Samples: 4

Max nTPM: 116.4
Min nTPM: 99.1
Sample A Male 116.4
Sample B Male 99.1
Sample C Female 111.8
Sample D Female 107.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.8
69059877 Antisense, RP_050317_04_D06, Mouse strain C57BL/6J (56 days, male) 8.8

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