MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA Brain:69.2 nTPM
GTEx:36.9 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:63.6 nTPM
Mouse:55.0 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
2666 Male, age 74, left hemisphere 73.8
1827 Male, age 72, unknown 69.8
2586 Male, age 75, left hemisphere 67.2
1870 Female, age 42, unknown 66.6
2828 Female, age 72, unknown 64.8
2411 Female, age 72, unknown 63.8
2219 Male, age 76, both hemispheres 63.2
1830 Male, age 51, unknown 61.7
2019 Male, age 18, unknown 61.6
1833 Male, age 53, unknown 61.3
Dorsal raphe nucleus
nTPM: 60.2
1828 Male, age 53, unknown 63.6
2047 Male, age 72, unknown 61.1
2016 Female, age 72, unknown 59.6
2750 Male, age 76, both hemispheres 59.6
2298 Female, age 72, unknown 57.2
Inferior colliculus
nTPM: 67.3
1848 Female, age 42, unknown 70.1
2849 Male, age 72, unknown 67.7
2097 Female, age 72, unknown 66.9
1890 Male, age 53, unknown 64.7
Median raphe nucleus
nTPM: 68.0
2220 Male, age 76, midline 68.0
Periaquaductal grey, anterior
nTPM: 64.6
1947 Male, age 18, unknown 66.2
2502 Female, age 75, unknown 65.8
1795 Male, age 51, unknown 61.9
Periaquaductal grey, dorsal
nTPM: 65.5
2850 Male, age 76, both hemispheres 75.8
2464 Female, age 72, unknown 63.2
1831 Male, age 72, unknown 62.8
1840 Male, age 53, unknown 60.2
Periaquaductal grey, lateral
nTPM: 62.9
2140 Male, age 76, both hemispheres 67.0
2053 Male, age 18, unknown 65.0
2272 Male, age 74, both hemispheres 56.6
Pretectal area
nTPM: 69.2
1816 Male, age 51, unknown 84.0
1815 Male, age 53, unknown 78.8
1817 Female, age 42, unknown 78.3
2667 Female, age 75, unknown 75.8
1944 Female, age 72, unknown 71.1
2007 Male, age 72, unknown 69.2
2825 Male, age 18, unknown 65.0
2407 Male, age 75, both hemispheres 62.8
2316 Male, age 76, right hemisphere 59.8
2273 Male, age 74, both hemispheres 58.9
2224 Female, age 72, unknown 57.3
Red nucleus
nTPM: 64.5
1821 Female, age 72, unknown 74.7
2503 Female, age 72, unknown 72.6
1954 Female, age 42, unknown 67.8
1865 Male, age 51, unknown 67.3
2588 Male, age 74, left hemisphere 67.0
1904 Male, age 53, unknown 66.9
2725 Female, age 75, unknown 61.6
2823 Male, age 76, right hemisphere 61.5
2227 Male, age 72, unknown 60.7
2785 Male, age 18, unknown 59.5
2584 Male, age 75, left hemisphere 57.5
2769 Male, age 72, unknown 57.4
Substantia nigra
nTPM: 68.3
2409 Female, age 72, unknown 77.5
2241 Male, age 72, unknown 75.4
2665 Male, age 74, both hemispheres 69.0
1889 Female, age 72, unknown 68.5
2699 Male, age 18, unknown 68.0
1916 Female, age 42, unknown 67.5
1851 Male, age 51, unknown 65.5
2583 Male, age 75, right hemisphere 65.1
1941 Male, age 53, unknown 64.3
2590 Female, age 75, unknown 62.1
Superior colliculus
nTPM: 67.5
2261 Male, age 18, unknown 76.7
1913 Female, age 42, unknown 71.3
2664 Male, age 75, both hemispheres 70.2
2668 Female, age 75, unknown 68.6
1995 Male, age 72, unknown 68.2
1796 Male, age 53, unknown 67.8
2087 Female, age 72, unknown 65.8
2587 Male, age 74, left hemisphere 63.2
1839 Male, age 51, unknown 61.9
1895 Male, age 76, right hemisphere 61.2
Ventral tegmental area
nTPM: 60.3
2410 Female, age 72, unknown 63.0
2218 Male, age 76, both hemispheres 62.2
2021 Male, age 53, unknown 60.3
1915 Female, age 42, unknown 59.5
1942 Male, age 51, unknown 58.8
2223 Female, age 72, unknown 57.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.9
Samples: 139

Max nTPM: 52.8
Min nTPM: 27.1
Std nTPM: 5.7
Median nTPM: 36.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 51.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 49.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 48.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 48.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 47.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 46.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 64.9
Min nTPM: 51.8
Sample A Female 64.9
Sample B Female 51.8
Sample C Male 63.2
Sample D Male 55.5
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 68.5
Min nTPM: 54.4
Sample A Female 67.2
Sample B Female 54.4
Sample C Male 68.5
Sample D Male 64.3
Periaqueductal gray
nTPM: 51.7
Samples: 3

Max nTPM: 54.9
Min nTPM: 48.1
Sample B Female 52.2
Sample C Male 54.9
Sample D Male 48.1
Superior colliculi
nTPM: 61.0
Samples: 4

Max nTPM: 65.8
Min nTPM: 51.0
Sample A Female 65.8
Sample B Female 51.0
Sample C Male 64.6
Sample D Male 62.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 57.6
Min nTPM: 51.1
Sample A Male 51.1
Sample B Male 54.3
Sample C Female 57.6
Sample D Female 57.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
74583203 Antisense, RP_051214_01_B05, Mouse strain C57BL/6J (56 days, male) 5.1
68443220 Antisense, RP_050111_01_E12, Mouse strain C57BL/6J (56 days, male) 0.6
75931621 Antisense, RP_060606_01_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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