HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:26.5 nTPM
HPA Brain:40.8 nTPM
GTEx:26.5 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:55.6 nTPM
Allen mouse:13.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024037Antibody HPA065325Antibody HPA074591Antibody CAB025417
Glial cells Not detectedMediumMediumHigh
Neuronal cells HighMediumHighHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.8
Sample id Sample description nTPM
Hippocampus
nTPM: 39.1
1898 Male, age 80, left hemisphere 42.0
1855 Male, age 76, left hemisphere 39.7
2529 Female, age 94, left hemisphere 39.4
2621 Female, age 67, right hemisphere 39.0
1911 Female, age 85, right hemisphere 38.4
2148 Female, age 91, left hemisphere 36.3
Dentate gyrus
nTPM: 39.2
2530 Female, age 94, left hemisphere 48.7
2010 Male, age 76, both hemispheres 41.1
1927 Female, age 91, both hemispheres 38.1
2246 Female, age 85, both hemispheres 37.1
2531 Female, age 67, both hemispheres 35.4
2528 Male, age 74, both hemispheres 35.0
Entorhinal gyrus
nTPM: 39.8
2686 Male, age 75, right hemisphere 47.7
2117 Female, age 91, right hemisphere 45.8
1938 Female, age 85, left hemisphere 39.9
1787 Male, age 76, left hemisphere 36.6
2764 Male, age 80, right hemisphere 36.6
2613 Female, age 94, left hemisphere 32.5
Hippocampus, CA1
nTPM: 37.7
2749 Male, age 80, left hemisphere 43.6
1873 Female, age 85, both hemispheres 38.5
2527 Male, age 74, both hemispheres 37.6
2045 Male, age 76, both hemispheres 36.0
2082 Female, age 91, right hemisphere 32.7
Hippocampus, CA2
nTPM: 39.1
1963 Male, age 80, left hemisphere 45.0
1892 Male, age 76, both hemispheres 41.7
2249 Male, age 74, both hemispheres 38.5
2437 Female, age 94, left hemisphere 37.2
2113 Female, age 91, right hemisphere 36.2
1940 Female, age 85, left hemisphere 36.0
Hippocampus, CA3
nTPM: 36.4
2137 Male, age 80, left hemisphere 44.9
1891 Female, age 85, both hemispheres 42.4
1867 Male, age 76, both hemispheres 39.4
2436 Male, age 74, both hemispheres 31.3
2620 Female, age 94, left hemisphere 30.3
2861 Female, age 67, both hemispheres 30.1
Parahippocampal cortex
nTPM: 35.7
1850 Male, age 80, both hemispheres 39.2
2692 Male, age 74, both hemispheres 38.5
2245 Female, age 91, both hemispheres 37.6
1990 Female, age 91, right hemisphere 37.4
2532 Female, age 72, left hemisphere 37.3
1933 Female, age 85, both hemispheres 35.5
2250 Female, age 67, right hemisphere 34.9
2018 Male, age 76, both hemispheres 33.6
2693 Female, age 94, both hemispheres 32.2
2622 Female, age 67, right hemisphere 30.6
Perirhinal gyrus
nTPM: 35.1
1794 Male, age 80, right hemisphere 36.5
1841 Female, age 85, right hemisphere 36.4
1847 Female, age 91, left hemisphere 35.8
2848 Male, age 76, right hemisphere 35.2
2521 Female, age 94, right hemisphere 31.6
Subiculum
nTPM: 40.8
1901 Male, age 80, both hemispheres 44.5
2438 Female, age 94, left hemisphere 43.8
2042 Male, age 76, both hemispheres 42.0
1977 Female, age 85, both hemispheres 41.2
2729 Female, age 91, right hemisphere 39.1
2619 Male, age 74, both hemispheres 34.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.5
Samples: 197

Max nTPM: 59.3
Min nTPM: 14.3
Std nTPM: 8.3
Median nTPM: 24.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 59.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 55.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 55.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 54.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 53.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 52.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 50.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 48.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 48.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 44.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 40.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.5
FF:10153-102I9 76 years, female 41.7
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 59.2
Pig sample Sample description nTPM
Subiculum
nTPM: 51.6
Samples: 4

Max nTPM: 62.5
Min nTPM: 47.2
Sample A Female 62.5
Sample B Female 47.3
Sample C Male 47.2
Sample D Male 49.4
Dorsal hippocampus
nTPM: 59.2
Samples: 4

Max nTPM: 68.0
Min nTPM: 46.4
Sample A Female 68.0
Sample B Female 55.0
Sample C Male 67.3
Sample D Male 46.4
Entorhinal cortex
nTPM: 58.7
Samples: 4

Max nTPM: 64.9
Min nTPM: 55.9
Sample A Female 56.4
Sample B Female 64.9
Sample C Male 57.5
Sample D Male 55.9
Ventral hippocampus
nTPM: 52.1
Samples: 4

Max nTPM: 61.5
Min nTPM: 43.0
Sample A Female 51.9
Sample B Female 43.0
Sample C Male 52.1
Sample D Male 61.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.3
Samples: 4

Max nTPM: 56.4
Min nTPM: 48.5
Sample A Male 56.4
Sample B Male 51.0
Sample C Female 53.4
Sample D Female 48.5
Hippocampal formation
nTPM: 55.6
Samples: 4

Max nTPM: 61.0
Min nTPM: 50.1
Sample A Male 54.7
Sample B Male 56.4
Sample C Female 61.0
Sample D Female 50.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.7
69407194 Antisense, RP_050414_01_A11, Mouse strain C57BL/6J (56 days, male) 13.7

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