MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:37.0 nTPM
GTEx:14.5 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:53.3 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2411 Female, age 72, unknown 38.9
1870 Female, age 42, unknown 37.8
1827 Male, age 72, unknown 37.0
2019 Male, age 18, unknown 35.9
1830 Male, age 51, unknown 33.2
1833 Male, age 53, unknown 32.5
2586 Male, age 75, left hemisphere 30.9
2666 Male, age 74, left hemisphere 30.0
2219 Male, age 76, both hemispheres 29.1
2828 Female, age 72, unknown 29.0
Dorsal raphe nucleus
nTPM: 33.6
2298 Female, age 72, unknown 37.2
2016 Female, age 72, unknown 34.9
1828 Male, age 53, unknown 32.9
2750 Male, age 76, both hemispheres 32.3
2047 Male, age 72, unknown 30.7
Inferior colliculus
nTPM: 34.6
2097 Female, age 72, unknown 39.1
1848 Female, age 42, unknown 34.6
1890 Male, age 53, unknown 33.0
2849 Male, age 72, unknown 31.6
Median raphe nucleus
nTPM: 31.6
2220 Male, age 76, midline 31.6
Periaquaductal grey, anterior
nTPM: 35.3
1947 Male, age 18, unknown 40.1
1795 Male, age 51, unknown 33.5
2502 Female, age 75, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 36.3
2850 Male, age 76, both hemispheres 38.3
2464 Female, age 72, unknown 37.0
1840 Male, age 53, unknown 35.8
1831 Male, age 72, unknown 33.9
Periaquaductal grey, lateral
nTPM: 37.0
2272 Male, age 74, both hemispheres 40.7
2140 Male, age 76, both hemispheres 36.7
2053 Male, age 18, unknown 33.5
Pretectal area
nTPM: 36.6
2273 Male, age 74, both hemispheres 44.0
2007 Male, age 72, unknown 41.2
1815 Male, age 53, unknown 39.4
1816 Male, age 51, unknown 39.0
1817 Female, age 42, unknown 38.9
1944 Female, age 72, unknown 37.5
2224 Female, age 72, unknown 36.5
2667 Female, age 75, unknown 34.6
2316 Male, age 76, right hemisphere 32.7
2825 Male, age 18, unknown 31.0
2407 Male, age 75, both hemispheres 27.7
Red nucleus
nTPM: 31.9
1821 Female, age 72, unknown 38.6
2785 Male, age 18, unknown 35.8
2725 Female, age 75, unknown 33.4
1865 Male, age 51, unknown 33.1
1904 Male, age 53, unknown 32.5
1954 Female, age 42, unknown 32.4
2503 Female, age 72, unknown 31.6
2823 Male, age 76, right hemisphere 30.3
2769 Male, age 72, unknown 29.7
2227 Male, age 72, unknown 28.9
2584 Male, age 75, left hemisphere 28.4
2588 Male, age 74, left hemisphere 27.8
Substantia nigra
nTPM: 32.8
1889 Female, age 72, unknown 38.5
2241 Male, age 72, unknown 38.4
1941 Male, age 53, unknown 35.5
2590 Female, age 75, unknown 35.4
2409 Female, age 72, unknown 32.5
2583 Male, age 75, right hemisphere 31.8
1851 Male, age 51, unknown 31.7
1916 Female, age 42, unknown 30.9
2699 Male, age 18, unknown 28.5
2665 Male, age 74, both hemispheres 24.9
Superior colliculus
nTPM: 33.9
2087 Female, age 72, unknown 36.7
2261 Male, age 18, unknown 35.7
1895 Male, age 76, right hemisphere 35.4
1913 Female, age 42, unknown 34.4
1995 Male, age 72, unknown 33.9
2668 Female, age 75, unknown 33.8
1796 Male, age 53, unknown 33.4
2587 Male, age 74, left hemisphere 33.3
1839 Male, age 51, unknown 32.5
2664 Male, age 75, both hemispheres 29.5
Ventral tegmental area
nTPM: 31.6
2410 Female, age 72, unknown 37.0
1942 Male, age 51, unknown 31.4
2218 Male, age 76, both hemispheres 30.8
1915 Female, age 42, unknown 30.7
2223 Female, age 72, unknown 30.6
2021 Male, age 53, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 139

Max nTPM: 26.3
Min nTPM: 8.1
Std nTPM: 3.4
Median nTPM: 14.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 26.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 25.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 21.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 21.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 20.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 19.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.1
FF:10158-103A5 76 years, female 51.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 27.7
Sample A Female 32.5
Sample B Female 28.6
Sample C Male 29.6
Sample D Male 27.7
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 43.0
Min nTPM: 32.4
Sample A Female 32.4
Sample B Female 34.5
Sample C Male 43.0
Sample D Male 36.8
Periaqueductal gray
nTPM: 30.8
Samples: 3

Max nTPM: 31.8
Min nTPM: 29.7
Sample B Female 31.8
Sample C Male 29.7
Sample D Male 30.9
Superior colliculi
nTPM: 36.2
Samples: 4

Max nTPM: 45.4
Min nTPM: 27.4
Sample A Female 33.6
Sample B Female 27.4
Sample C Male 45.4
Sample D Male 38.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 58.4
Min nTPM: 45.7
Sample A Male 45.7
Sample B Male 53.4
Sample C Female 58.4
Sample D Female 55.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
70303468 Antisense, RP_050609_01_E04, Mouse strain C57BL/6J (56 days, male) 4.2
74300771 Antisense, RP_051219_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org