MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.1 nTPM
HPA Brain:230.0 nTPM
GTEx:128.1 nTPM
FANTOM5:253.5 Scaled Tags Per Million
Pig:121.4 nTPM
Mouse:128.0 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 230.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.2
2019 Male, age 18, unknown 272.3
2411 Female, age 72, unknown 229.1
2219 Male, age 76, both hemispheres 195.8
2828 Female, age 72, unknown 184.9
1827 Male, age 72, unknown 184.6
2586 Male, age 75, left hemisphere 182.9
1870 Female, age 42, unknown 167.1
1833 Male, age 53, unknown 167.0
1830 Male, age 51, unknown 157.1
2666 Male, age 74, left hemisphere 151.4
Dorsal raphe nucleus
nTPM: 195.9
2298 Female, age 72, unknown 245.6
2750 Male, age 76, both hemispheres 202.4
1828 Male, age 53, unknown 194.7
2047 Male, age 72, unknown 169.7
2016 Female, age 72, unknown 167.0
Inferior colliculus
nTPM: 200.1
2097 Female, age 72, unknown 267.7
1890 Male, age 53, unknown 249.2
1848 Female, age 42, unknown 157.2
2849 Male, age 72, unknown 126.4
Median raphe nucleus
nTPM: 172.1
2220 Male, age 76, midline 172.1
Periaquaductal grey, anterior
nTPM: 187.0
2502 Female, age 75, unknown 192.7
1795 Male, age 51, unknown 188.6
1947 Male, age 18, unknown 179.6
Periaquaductal grey, dorsal
nTPM: 163.3
1831 Male, age 72, unknown 178.0
2850 Male, age 76, both hemispheres 171.6
2464 Female, age 72, unknown 165.4
1840 Male, age 53, unknown 138.0
Periaquaductal grey, lateral
nTPM: 190.5
2272 Male, age 74, both hemispheres 257.6
2140 Male, age 76, both hemispheres 173.4
2053 Male, age 18, unknown 140.5
Pretectal area
nTPM: 230.0
1817 Female, age 42, unknown 328.2
2007 Male, age 72, unknown 311.3
1816 Male, age 51, unknown 295.1
1815 Male, age 53, unknown 275.4
1944 Female, age 72, unknown 270.1
2273 Male, age 74, both hemispheres 240.0
2667 Female, age 75, unknown 198.9
2224 Female, age 72, unknown 193.8
2316 Male, age 76, right hemisphere 161.3
2825 Male, age 18, unknown 137.4
2407 Male, age 75, both hemispheres 118.6
Red nucleus
nTPM: 225.6
2785 Male, age 18, unknown 274.9
1821 Female, age 72, unknown 274.0
2725 Female, age 75, unknown 270.8
2503 Female, age 72, unknown 249.9
1904 Male, age 53, unknown 247.2
1954 Female, age 42, unknown 227.4
2823 Male, age 76, right hemisphere 220.3
1865 Male, age 51, unknown 216.5
2769 Male, age 72, unknown 214.5
2227 Male, age 72, unknown 212.7
2588 Male, age 74, left hemisphere 153.0
2584 Male, age 75, left hemisphere 145.6
Substantia nigra
nTPM: 223.8
1916 Female, age 42, unknown 378.0
1889 Female, age 72, unknown 267.4
1851 Male, age 51, unknown 263.4
2241 Male, age 72, unknown 257.3
2409 Female, age 72, unknown 240.0
2699 Male, age 18, unknown 198.8
1941 Male, age 53, unknown 194.6
2583 Male, age 75, right hemisphere 166.3
2590 Female, age 75, unknown 151.0
2665 Male, age 74, both hemispheres 121.2
Superior colliculus
nTPM: 182.4
2087 Female, age 72, unknown 236.3
2261 Male, age 18, unknown 228.8
2668 Female, age 75, unknown 219.0
1913 Female, age 42, unknown 190.7
1796 Male, age 53, unknown 187.9
1995 Male, age 72, unknown 177.1
2587 Male, age 74, left hemisphere 174.7
1895 Male, age 76, right hemisphere 159.0
1839 Male, age 51, unknown 143.8
2664 Male, age 75, both hemispheres 106.5
Ventral tegmental area
nTPM: 222.7
2410 Female, age 72, unknown 307.3
2218 Male, age 76, both hemispheres 268.8
1915 Female, age 42, unknown 247.2
1942 Male, age 51, unknown 192.6
2223 Female, age 72, unknown 160.7
2021 Male, age 53, unknown 159.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.1
Samples: 139

Max nTPM: 313.4
Min nTPM: 33.7
Std nTPM: 43.4
Median nTPM: 121.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 313.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 275.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 215.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 214.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 204.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 199.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 195.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 194.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 194.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 192.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 191.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 253.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 253.5
FF:10158-103A5 76 years, female 253.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 121.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.1
Samples: 4

Max nTPM: 107.4
Min nTPM: 61.3
Sample A Female 106.8
Sample B Female 61.3
Sample C Male 107.4
Sample D Male 76.9
Midbrain
nTPM: 121.4
Samples: 4

Max nTPM: 190.3
Min nTPM: 66.8
Sample A Female 136.7
Sample B Female 66.8
Sample C Male 190.3
Sample D Male 91.6
Periaqueductal gray
nTPM: 68.2
Samples: 3

Max nTPM: 72.5
Min nTPM: 61.0
Sample B Female 71.1
Sample C Male 72.5
Sample D Male 61.0
Superior colliculi
nTPM: 110.9
Samples: 4

Max nTPM: 165.0
Min nTPM: 72.3
Sample A Female 101.6
Sample B Female 72.3
Sample C Male 165.0
Sample D Male 104.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.0
Samples: 4

Max nTPM: 135.4
Min nTPM: 118.5
Sample A Male 118.5
Sample B Male 127.2
Sample C Female 135.4
Sample D Female 130.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
1700 Antisense, RP_040526_02_D07, Mouse strain C57BL/6J (56 days, male) 6.9
1699 Antisense, RP_040526_02_D07, Mouse strain C57BL/6J (56 days, male) 6.8

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