MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.9 nTPM
HPA Brain:230.3 nTPM
GTEx:87.9 nTPM
FANTOM5:5.2 Scaled Tags Per Million
Pig:81.4 nTPM
Mouse:435.8 nTPM
Allen mouse:24.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 230.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.6
2666 Male, age 74, left hemisphere 217.7
2586 Male, age 75, left hemisphere 215.4
1827 Male, age 72, unknown 208.2
2219 Male, age 76, both hemispheres 180.5
2411 Female, age 72, unknown 177.1
1870 Female, age 42, unknown 157.6
2828 Female, age 72, unknown 154.8
1833 Male, age 53, unknown 144.0
2019 Male, age 18, unknown 131.9
1830 Male, age 51, unknown 129.0
Dorsal raphe nucleus
nTPM: 174.2
2298 Female, age 72, unknown 232.5
2047 Male, age 72, unknown 207.7
2750 Male, age 76, both hemispheres 169.5
1828 Male, age 53, unknown 143.6
2016 Female, age 72, unknown 117.5
Inferior colliculus
nTPM: 165.3
2849 Male, age 72, unknown 190.7
1848 Female, age 42, unknown 176.8
2097 Female, age 72, unknown 164.7
1890 Male, age 53, unknown 129.1
Median raphe nucleus
nTPM: 226.8
2220 Male, age 76, midline 226.8
Periaquaductal grey, anterior
nTPM: 230.3
2502 Female, age 75, unknown 239.9
1795 Male, age 51, unknown 230.9
1947 Male, age 18, unknown 220.3
Periaquaductal grey, dorsal
nTPM: 168.0
1840 Male, age 53, unknown 220.5
2850 Male, age 76, both hemispheres 159.7
2464 Female, age 72, unknown 159.4
1831 Male, age 72, unknown 132.4
Periaquaductal grey, lateral
nTPM: 132.7
2140 Male, age 76, both hemispheres 155.2
2053 Male, age 18, unknown 148.4
2272 Male, age 74, both hemispheres 94.5
Pretectal area
nTPM: 191.4
1944 Female, age 72, unknown 253.6
1816 Male, age 51, unknown 253.5
2667 Female, age 75, unknown 249.6
2007 Male, age 72, unknown 236.1
1817 Female, age 42, unknown 211.4
2224 Female, age 72, unknown 196.8
2825 Male, age 18, unknown 179.2
1815 Male, age 53, unknown 176.3
2407 Male, age 75, both hemispheres 129.5
2316 Male, age 76, right hemisphere 127.7
2273 Male, age 74, both hemispheres 92.2
Red nucleus
nTPM: 98.6
2584 Male, age 75, left hemisphere 157.8
2785 Male, age 18, unknown 133.9
1821 Female, age 72, unknown 114.4
2588 Male, age 74, left hemisphere 103.4
1954 Female, age 42, unknown 99.3
2769 Male, age 72, unknown 98.1
2227 Male, age 72, unknown 94.8
1865 Male, age 51, unknown 78.6
1904 Male, age 53, unknown 77.1
2503 Female, age 72, unknown 76.6
2823 Male, age 76, right hemisphere 76.3
2725 Female, age 75, unknown 73.3
Substantia nigra
nTPM: 171.7
1941 Male, age 53, unknown 258.0
2665 Male, age 74, both hemispheres 245.9
1916 Female, age 42, unknown 207.1
1889 Female, age 72, unknown 201.7
1851 Male, age 51, unknown 172.7
2241 Male, age 72, unknown 149.1
2590 Female, age 75, unknown 129.3
2583 Male, age 75, right hemisphere 121.2
2699 Male, age 18, unknown 117.6
2409 Female, age 72, unknown 114.1
Superior colliculus
nTPM: 175.2
2664 Male, age 75, both hemispheres 222.2
2261 Male, age 18, unknown 202.8
2087 Female, age 72, unknown 202.0
1796 Male, age 53, unknown 199.9
2668 Female, age 75, unknown 198.2
1895 Male, age 76, right hemisphere 190.0
1839 Male, age 51, unknown 178.1
2587 Male, age 74, left hemisphere 138.2
1913 Female, age 42, unknown 119.2
1995 Male, age 72, unknown 101.1
Ventral tegmental area
nTPM: 168.6
2218 Male, age 76, both hemispheres 196.0
1915 Female, age 42, unknown 189.8
1942 Male, age 51, unknown 174.3
2410 Female, age 72, unknown 161.3
2021 Male, age 53, unknown 152.9
2223 Female, age 72, unknown 137.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.9
Samples: 139

Max nTPM: 531.8
Min nTPM: 9.3
Std nTPM: 72.3
Median nTPM: 69.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 531.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 380.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 247.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 231.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 209.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 207.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 201.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 195.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 194.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 193.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 193.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.2
FF:10158-103A5 76 years, female 5.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.8
Samples: 4

Max nTPM: 76.5
Min nTPM: 17.0
Sample A Female 76.5
Sample B Female 37.1
Sample C Male 64.6
Sample D Male 17.0
Midbrain
nTPM: 68.7
Samples: 4

Max nTPM: 98.3
Min nTPM: 25.8
Sample A Female 25.8
Sample B Female 55.3
Sample C Male 95.2
Sample D Male 98.3
Periaqueductal gray
nTPM: 63.1
Samples: 3

Max nTPM: 79.0
Min nTPM: 50.6
Sample B Female 59.7
Sample C Male 79.0
Sample D Male 50.6
Superior colliculi
nTPM: 81.4
Samples: 4

Max nTPM: 104.7
Min nTPM: 41.9
Sample A Female 94.9
Sample B Female 41.9
Sample C Male 104.7
Sample D Male 84.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 435.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 435.8
Samples: 4

Max nTPM: 437.7
Min nTPM: 432.4
Sample A Male 436.2
Sample B Male 437.0
Sample C Female 437.7
Sample D Female 432.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.6
70616006 Antisense, RP_050725_01_D09, Mouse strain C57BL/6J (56 days, male) 24.9
564653 Antisense, RP_040826_01_B10, Mouse strain C57BL/6J (56 days, male) 24.2

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