MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.3 nTPM
HPA Brain:19.5 nTPM
GTEx:2.3 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:23.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.4
2019 Male, age 18, unknown 22.5
1827 Male, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 16.1
2586 Male, age 75, left hemisphere 15.5
1870 Female, age 42, unknown 14.3
2411 Female, age 72, unknown 14.3
2219 Male, age 76, both hemispheres 14.2
1830 Male, age 51, unknown 14.1
1833 Male, age 53, unknown 13.6
2828 Female, age 72, unknown 12.6
Dorsal raphe nucleus
nTPM: 13.7
2298 Female, age 72, unknown 15.5
2016 Female, age 72, unknown 13.3
2047 Male, age 72, unknown 13.3
2750 Male, age 76, both hemispheres 13.3
1828 Male, age 53, unknown 13.0
Inferior colliculus
nTPM: 18.0
2097 Female, age 72, unknown 21.0
1890 Male, age 53, unknown 19.3
1848 Female, age 42, unknown 17.1
2849 Male, age 72, unknown 14.6
Median raphe nucleus
nTPM: 13.9
2220 Male, age 76, midline 13.9
Periaquaductal grey, anterior
nTPM: 15.4
1795 Male, age 51, unknown 16.1
2502 Female, age 75, unknown 16.1
1947 Male, age 18, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 14.9
1831 Male, age 72, unknown 16.4
2464 Female, age 72, unknown 14.8
2850 Male, age 76, both hemispheres 14.5
1840 Male, age 53, unknown 13.9
Periaquaductal grey, lateral
nTPM: 15.2
2272 Male, age 74, both hemispheres 17.7
2053 Male, age 18, unknown 14.7
2140 Male, age 76, both hemispheres 13.1
Pretectal area
nTPM: 19.5
2007 Male, age 72, unknown 26.7
1816 Male, age 51, unknown 25.3
1817 Female, age 42, unknown 25.2
1944 Female, age 72, unknown 24.0
1815 Male, age 53, unknown 21.7
2273 Male, age 74, both hemispheres 17.2
2224 Female, age 72, unknown 16.3
2407 Male, age 75, both hemispheres 15.8
2667 Female, age 75, unknown 15.4
2316 Male, age 76, right hemisphere 13.9
2825 Male, age 18, unknown 13.6
Red nucleus
nTPM: 15.5
2785 Male, age 18, unknown 20.3
1821 Female, age 72, unknown 17.5
1865 Male, age 51, unknown 16.0
2503 Female, age 72, unknown 16.0
1954 Female, age 42, unknown 15.9
1904 Male, age 53, unknown 15.2
2769 Male, age 72, unknown 14.9
2584 Male, age 75, left hemisphere 14.8
2823 Male, age 76, right hemisphere 14.7
2227 Male, age 72, unknown 14.3
2725 Female, age 75, unknown 13.8
2588 Male, age 74, left hemisphere 12.7
Substantia nigra
nTPM: 15.8
1889 Female, age 72, unknown 20.7
1941 Male, age 53, unknown 18.5
2409 Female, age 72, unknown 17.7
2583 Male, age 75, right hemisphere 17.3
2590 Female, age 75, unknown 15.2
2241 Male, age 72, unknown 15.0
1916 Female, age 42, unknown 14.5
1851 Male, age 51, unknown 14.3
2665 Male, age 74, both hemispheres 14.1
2699 Male, age 18, unknown 11.0
Superior colliculus
nTPM: 17.4
2668 Female, age 75, unknown 23.1
2087 Female, age 72, unknown 20.9
2261 Male, age 18, unknown 19.6
1895 Male, age 76, right hemisphere 17.8
1796 Male, age 53, unknown 16.1
1913 Female, age 42, unknown 16.1
2587 Male, age 74, left hemisphere 16.0
2664 Male, age 75, both hemispheres 15.2
1995 Male, age 72, unknown 14.8
1839 Male, age 51, unknown 14.3
Ventral tegmental area
nTPM: 14.0
2410 Female, age 72, unknown 15.7
2218 Male, age 76, both hemispheres 14.9
1915 Female, age 42, unknown 13.5
2223 Female, age 72, unknown 13.5
1942 Male, age 51, unknown 13.4
2021 Male, age 53, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.3
Samples: 139

Max nTPM: 5.9
Min nTPM: 0.4
Std nTPM: 0.9
Median nTPM: 2.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 5.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 4.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 4.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 3.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 3.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.1
FF:10158-103A5 76 years, female 36.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 25.6
Min nTPM: 14.0
Sample A Female 25.6
Sample B Female 18.6
Sample C Male 17.3
Sample D Male 14.0
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 49.4
Min nTPM: 21.4
Sample A Female 22.5
Sample B Female 21.4
Sample C Male 49.4
Sample D Male 29.5
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 19.7
Min nTPM: 15.7
Sample B Female 19.7
Sample C Male 16.0
Sample D Male 15.7
Superior colliculi
nTPM: 34.9
Samples: 4

Max nTPM: 48.8
Min nTPM: 26.7
Sample A Female 32.3
Sample B Female 31.9
Sample C Male 48.8
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 25.5
Min nTPM: 22.4
Sample A Male 22.9
Sample B Male 24.9
Sample C Female 25.5
Sample D Female 22.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68845472 Antisense, RP_050224_01_H01, Mouse strain C57BL/6J (56 days, male) 0.5

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