MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:32.1 nTPM
GTEx:4.0 nTPM
FANTOM5:3.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
1830 Male, age 51, unknown 28.1
2019 Male, age 18, unknown 25.9
2219 Male, age 76, both hemispheres 25.1
2586 Male, age 75, left hemisphere 24.8
1833 Male, age 53, unknown 23.1
1827 Male, age 72, unknown 22.3
2666 Male, age 74, left hemisphere 20.2
2828 Female, age 72, unknown 20.2
2411 Female, age 72, unknown 19.6
1870 Female, age 42, unknown 15.2
Dorsal raphe nucleus
nTPM: 24.7
2750 Male, age 76, both hemispheres 27.4
2298 Female, age 72, unknown 26.8
2016 Female, age 72, unknown 26.3
2047 Male, age 72, unknown 22.3
1828 Male, age 53, unknown 20.7
Inferior colliculus
nTPM: 18.4
1890 Male, age 53, unknown 21.9
2849 Male, age 72, unknown 19.7
1848 Female, age 42, unknown 17.9
2097 Female, age 72, unknown 14.0
Median raphe nucleus
nTPM: 18.8
2220 Male, age 76, midline 18.8
Periaquaductal grey, anterior
nTPM: 25.2
2502 Female, age 75, unknown 29.2
1795 Male, age 51, unknown 23.8
1947 Male, age 18, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 21.3
2464 Female, age 72, unknown 25.4
2850 Male, age 76, both hemispheres 20.3
1831 Male, age 72, unknown 19.8
1840 Male, age 53, unknown 19.6
Periaquaductal grey, lateral
nTPM: 32.1
2272 Male, age 74, both hemispheres 46.8
2140 Male, age 76, both hemispheres 26.9
2053 Male, age 18, unknown 22.4
Pretectal area
nTPM: 22.4
2316 Male, age 76, right hemisphere 36.6
2273 Male, age 74, both hemispheres 32.6
2407 Male, age 75, both hemispheres 25.3
2825 Male, age 18, unknown 24.2
1944 Female, age 72, unknown 22.9
2007 Male, age 72, unknown 19.5
2224 Female, age 72, unknown 19.5
1815 Male, age 53, unknown 18.9
2667 Female, age 75, unknown 16.3
1816 Male, age 51, unknown 15.7
1817 Female, age 42, unknown 14.4
Red nucleus
nTPM: 21.9
2823 Male, age 76, right hemisphere 34.0
2785 Male, age 18, unknown 27.3
1904 Male, age 53, unknown 25.4
2584 Male, age 75, left hemisphere 25.3
1865 Male, age 51, unknown 25.2
2588 Male, age 74, left hemisphere 25.0
2769 Male, age 72, unknown 22.8
2227 Male, age 72, unknown 20.0
2503 Female, age 72, unknown 19.3
2725 Female, age 75, unknown 15.1
1821 Female, age 72, unknown 12.3
1954 Female, age 42, unknown 10.8
Substantia nigra
nTPM: 18.6
2590 Female, age 75, unknown 26.1
1941 Male, age 53, unknown 23.7
2241 Male, age 72, unknown 20.9
2409 Female, age 72, unknown 18.5
2665 Male, age 74, both hemispheres 17.2
2699 Male, age 18, unknown 17.1
2583 Male, age 75, right hemisphere 16.9
1889 Female, age 72, unknown 16.2
1851 Male, age 51, unknown 16.1
1916 Female, age 42, unknown 13.1
Superior colliculus
nTPM: 23.8
1895 Male, age 76, right hemisphere 31.4
2668 Female, age 75, unknown 25.8
1913 Female, age 42, unknown 25.7
2664 Male, age 75, both hemispheres 25.0
1995 Male, age 72, unknown 23.3
2587 Male, age 74, left hemisphere 22.8
2261 Male, age 18, unknown 22.0
2087 Female, age 72, unknown 21.6
1839 Male, age 51, unknown 20.8
1796 Male, age 53, unknown 19.4
Ventral tegmental area
nTPM: 18.8
1942 Male, age 51, unknown 22.4
2223 Female, age 72, unknown 20.4
2218 Male, age 76, both hemispheres 19.4
2410 Female, age 72, unknown 17.6
2021 Male, age 53, unknown 16.7
1915 Female, age 42, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 49.9
Min nTPM: 0.6
Std nTPM: 5.0
Median nTPM: 2.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 49.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 25.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 16.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 10.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 10.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 9.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 8.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 8.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.4
FF:10158-103A5 76 years, female 3.4

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