HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:242.6 nTPM
HPA Brain:104.8 nTPM
GTEx:242.6 nTPM
FANTOM5:967.7 Scaled Tags Per Million
Pig:557.2 nTPM
Mouse:1004.2 nTPM
Allen mouse:6.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA078265
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Hippocampus
nTPM: 86.9
1898 Male, age 80, left hemisphere 128.1
2621 Female, age 67, right hemisphere 91.2
2529 Female, age 94, left hemisphere 85.5
1855 Male, age 76, left hemisphere 81.3
1911 Female, age 85, right hemisphere 67.9
2148 Female, age 91, left hemisphere 67.3
Dentate gyrus
nTPM: 89.7
1927 Female, age 91, both hemispheres 112.9
2530 Female, age 94, left hemisphere 107.2
2010 Male, age 76, both hemispheres 104.1
2528 Male, age 74, both hemispheres 78.5
2246 Female, age 85, both hemispheres 75.1
2531 Female, age 67, both hemispheres 60.6
Entorhinal gyrus
nTPM: 70.4
2764 Male, age 80, right hemisphere 85.8
1787 Male, age 76, left hemisphere 82.0
1938 Female, age 85, left hemisphere 81.6
2613 Female, age 94, left hemisphere 64.1
2117 Female, age 91, right hemisphere 59.0
2686 Male, age 75, right hemisphere 49.7
Hippocampus, CA1
nTPM: 104.8
2749 Male, age 80, left hemisphere 170.7
2527 Male, age 74, both hemispheres 99.3
1873 Female, age 85, both hemispheres 92.2
2045 Male, age 76, both hemispheres 88.8
2082 Female, age 91, right hemisphere 73.1
Hippocampus, CA2
nTPM: 99.5
1892 Male, age 76, both hemispheres 133.3
1963 Male, age 80, left hemisphere 130.0
2249 Male, age 74, both hemispheres 113.4
2437 Female, age 94, left hemisphere 92.1
2113 Female, age 91, right hemisphere 69.0
1940 Female, age 85, left hemisphere 59.3
Hippocampus, CA3
nTPM: 85.4
2137 Male, age 80, left hemisphere 108.8
1867 Male, age 76, both hemispheres 106.5
2436 Male, age 74, both hemispheres 97.6
1891 Female, age 85, both hemispheres 79.3
2620 Female, age 94, left hemisphere 62.3
2861 Female, age 67, both hemispheres 58.1
Parahippocampal cortex
nTPM: 78.1
2250 Female, age 67, right hemisphere 108.5
1850 Male, age 80, both hemispheres 101.7
1990 Female, age 91, right hemisphere 88.8
2245 Female, age 91, both hemispheres 84.8
2018 Male, age 76, both hemispheres 84.1
1933 Female, age 85, both hemispheres 76.6
2693 Female, age 94, both hemispheres 69.4
2532 Female, age 72, left hemisphere 64.1
2692 Male, age 74, both hemispheres 52.7
2622 Female, age 67, right hemisphere 50.4
Perirhinal gyrus
nTPM: 101.0
1847 Female, age 91, left hemisphere 130.7
1794 Male, age 80, right hemisphere 119.3
1841 Female, age 85, right hemisphere 95.4
2521 Female, age 94, right hemisphere 88.3
2848 Male, age 76, right hemisphere 71.4
Subiculum
nTPM: 80.3
1901 Male, age 80, both hemispheres 92.9
1977 Female, age 85, both hemispheres 92.8
2438 Female, age 94, left hemisphere 79.0
2619 Male, age 74, both hemispheres 77.2
2042 Male, age 76, both hemispheres 71.8
2729 Female, age 91, right hemisphere 68.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 242.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 242.6
Samples: 197

Max nTPM: 821.8
Min nTPM: 87.4
Std nTPM: 98.2
Median nTPM: 219.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 821.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 586.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 536.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 510.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 501.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 459.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 457.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 456.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 442.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 422.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 419.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 967.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 967.7
FF:10169-103B7 60 years, female 1339.7
FF:10153-102I9 76 years, female 595.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 557.2
Pig sample Sample description nTPM
Subiculum
nTPM: 432.7
Samples: 4

Max nTPM: 564.8
Min nTPM: 384.3
Sample A Female 564.8
Sample B Female 392.4
Sample C Male 389.1
Sample D Male 384.3
Dorsal hippocampus
nTPM: 525.6
Samples: 4

Max nTPM: 667.0
Min nTPM: 374.0
Sample A Female 667.0
Sample B Female 465.0
Sample C Male 596.3
Sample D Male 374.0
Entorhinal cortex
nTPM: 557.2
Samples: 4

Max nTPM: 751.0
Min nTPM: 418.7
Sample A Female 478.8
Sample B Female 751.0
Sample C Male 580.3
Sample D Male 418.7
Ventral hippocampus
nTPM: 465.1
Samples: 4

Max nTPM: 567.2
Min nTPM: 380.5
Sample A Female 567.2
Sample B Female 380.5
Sample C Male 461.5
Sample D Male 451.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1004.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 931.8
Samples: 4

Max nTPM: 979.0
Min nTPM: 860.1
Sample A Male 921.8
Sample B Male 966.3
Sample C Female 979.0
Sample D Female 860.1
Hippocampal formation
nTPM: 1004.2
Samples: 4

Max nTPM: 1190.8
Min nTPM: 909.1
Sample A Male 1190.8
Sample B Male 909.1
Sample C Female 970.4
Sample D Female 946.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.9
69782139 Antisense, RP_050505_02_D07, Mouse strain C57BL/6J (56 days, male) 6.9

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