MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:217.2 nTPM
HPA Brain:79.2 nTPM
GTEx:217.2 nTPM
FANTOM5:497.0 Scaled Tags Per Million
Pig:738.1 nTPM
Mouse:994.2 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.6
2019 Male, age 18, unknown 76.4
1827 Male, age 72, unknown 72.7
2411 Female, age 72, unknown 69.5
1870 Female, age 42, unknown 62.7
2586 Male, age 75, left hemisphere 59.5
2828 Female, age 72, unknown 55.4
2666 Male, age 74, left hemisphere 53.6
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 52.1
2219 Male, age 76, both hemispheres 50.3
Dorsal raphe nucleus
nTPM: 65.3
2298 Female, age 72, unknown 87.1
2047 Male, age 72, unknown 64.2
1828 Male, age 53, unknown 63.1
2750 Male, age 76, both hemispheres 60.1
2016 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 79.2
2097 Female, age 72, unknown 106.2
1890 Male, age 53, unknown 85.8
1848 Female, age 42, unknown 67.7
2849 Male, age 72, unknown 57.3
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Periaquaductal grey, anterior
nTPM: 65.2
1947 Male, age 18, unknown 71.9
1795 Male, age 51, unknown 63.1
2502 Female, age 75, unknown 60.5
Periaquaductal grey, dorsal
nTPM: 54.1
1840 Male, age 53, unknown 58.8
2464 Female, age 72, unknown 56.9
1831 Male, age 72, unknown 53.4
2850 Male, age 76, both hemispheres 47.2
Periaquaductal grey, lateral
nTPM: 55.1
2053 Male, age 18, unknown 63.2
2272 Male, age 74, both hemispheres 57.9
2140 Male, age 76, both hemispheres 44.0
Pretectal area
nTPM: 75.7
1816 Male, age 51, unknown 105.7
2007 Male, age 72, unknown 105.5
1817 Female, age 42, unknown 92.8
1944 Female, age 72, unknown 85.9
1815 Male, age 53, unknown 76.7
2667 Female, age 75, unknown 70.4
2224 Female, age 72, unknown 67.1
2273 Male, age 74, both hemispheres 66.1
2316 Male, age 76, right hemisphere 56.4
2825 Male, age 18, unknown 53.6
2407 Male, age 75, both hemispheres 52.9
Red nucleus
nTPM: 67.4
1821 Female, age 72, unknown 91.9
2725 Female, age 75, unknown 75.5
2503 Female, age 72, unknown 72.2
2785 Male, age 18, unknown 71.0
2588 Male, age 74, left hemisphere 70.4
1865 Male, age 51, unknown 64.0
2769 Male, age 72, unknown 63.6
2584 Male, age 75, left hemisphere 63.5
2227 Male, age 72, unknown 63.0
2823 Male, age 76, right hemisphere 61.2
1954 Female, age 42, unknown 56.3
1904 Male, age 53, unknown 55.7
Substantia nigra
nTPM: 70.5
1889 Female, age 72, unknown 89.1
1941 Male, age 53, unknown 81.5
1851 Male, age 51, unknown 75.9
1916 Female, age 42, unknown 74.0
2241 Male, age 72, unknown 73.3
2665 Male, age 74, both hemispheres 71.1
2409 Female, age 72, unknown 66.3
2590 Female, age 75, unknown 65.8
2583 Male, age 75, right hemisphere 58.9
2699 Male, age 18, unknown 49.8
Superior colliculus
nTPM: 66.0
2587 Male, age 74, left hemisphere 77.2
2087 Female, age 72, unknown 75.1
2261 Male, age 18, unknown 72.2
1796 Male, age 53, unknown 71.1
2668 Female, age 75, unknown 68.9
1895 Male, age 76, right hemisphere 68.8
1913 Female, age 42, unknown 61.7
1839 Male, age 51, unknown 60.1
1995 Male, age 72, unknown 54.2
2664 Male, age 75, both hemispheres 51.1
Ventral tegmental area
nTPM: 65.2
2410 Female, age 72, unknown 73.7
2223 Female, age 72, unknown 73.1
1915 Female, age 42, unknown 72.3
2218 Male, age 76, both hemispheres 61.1
1942 Male, age 51, unknown 55.6
2021 Male, age 53, unknown 55.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 217.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 217.2
Samples: 139

Max nTPM: 620.8
Min nTPM: 108.0
Std nTPM: 68.1
Median nTPM: 203.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 620.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 446.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 399.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 371.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 356.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 351.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 331.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 330.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 328.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 319.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 318.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 497.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 497.0
FF:10158-103A5 76 years, female 497.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 738.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 489.0
Samples: 4

Max nTPM: 691.2
Min nTPM: 359.2
Sample A Female 691.2
Sample B Female 435.4
Sample C Male 470.0
Sample D Male 359.2
Midbrain
nTPM: 599.5
Samples: 4

Max nTPM: 725.5
Min nTPM: 509.0
Sample A Female 570.6
Sample B Female 509.0
Sample C Male 725.5
Sample D Male 593.0
Periaqueductal gray
nTPM: 398.5
Samples: 3

Max nTPM: 440.6
Min nTPM: 353.0
Sample B Female 401.8
Sample C Male 440.6
Sample D Male 353.0
Superior colliculi
nTPM: 738.1
Samples: 4

Max nTPM: 868.2
Min nTPM: 594.0
Sample A Female 828.5
Sample B Female 661.8
Sample C Male 868.2
Sample D Male 594.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 994.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 994.2
Samples: 4

Max nTPM: 1013.1
Min nTPM: 976.2
Sample A Male 1013.1
Sample B Male 998.3
Sample C Female 976.2
Sample D Female 989.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69782139 Antisense, RP_050505_02_D07, Mouse strain C57BL/6J (56 days, male) 6.5

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