MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.2 nTPM
HPA Brain:45.2 nTPM
GTEx:41.2 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:83.7 nTPM
Mouse:60.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
2019 Male, age 18, unknown 68.5
2828 Female, age 72, unknown 53.2
1870 Female, age 42, unknown 48.1
2411 Female, age 72, unknown 43.3
1830 Male, age 51, unknown 42.0
2586 Male, age 75, left hemisphere 41.8
1833 Male, age 53, unknown 41.6
2666 Male, age 74, left hemisphere 38.3
1827 Male, age 72, unknown 38.1
2219 Male, age 76, both hemispheres 28.9
Dorsal raphe nucleus
nTPM: 40.1
1828 Male, age 53, unknown 42.6
2047 Male, age 72, unknown 41.5
2016 Female, age 72, unknown 40.4
2750 Male, age 76, both hemispheres 40.3
2298 Female, age 72, unknown 35.8
Inferior colliculus
nTPM: 42.5
1848 Female, age 42, unknown 43.8
1890 Male, age 53, unknown 42.9
2849 Male, age 72, unknown 42.7
2097 Female, age 72, unknown 40.7
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 36.6
2502 Female, age 75, unknown 41.7
1947 Male, age 18, unknown 35.1
1795 Male, age 51, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 42.2
2850 Male, age 76, both hemispheres 50.7
1840 Male, age 53, unknown 40.6
1831 Male, age 72, unknown 39.8
2464 Female, age 72, unknown 37.7
Periaquaductal grey, lateral
nTPM: 38.4
2140 Male, age 76, both hemispheres 43.9
2053 Male, age 18, unknown 38.8
2272 Male, age 74, both hemispheres 32.4
Pretectal area
nTPM: 41.6
2407 Male, age 75, both hemispheres 59.3
2316 Male, age 76, right hemisphere 46.9
1817 Female, age 42, unknown 44.2
2667 Female, age 75, unknown 43.2
2273 Male, age 74, both hemispheres 43.1
1815 Male, age 53, unknown 38.9
2007 Male, age 72, unknown 38.5
1816 Male, age 51, unknown 37.2
2224 Female, age 72, unknown 36.2
1944 Female, age 72, unknown 35.5
2825 Male, age 18, unknown 35.1
Red nucleus
nTPM: 45.2
1954 Female, age 42, unknown 60.4
1865 Male, age 51, unknown 52.5
1821 Female, age 72, unknown 51.2
1904 Male, age 53, unknown 50.5
2769 Male, age 72, unknown 46.4
2227 Male, age 72, unknown 45.3
2823 Male, age 76, right hemisphere 42.9
2725 Female, age 75, unknown 42.5
2503 Female, age 72, unknown 41.1
2588 Male, age 74, left hemisphere 37.6
2785 Male, age 18, unknown 36.9
2584 Male, age 75, left hemisphere 34.7
Substantia nigra
nTPM: 42.3
2409 Female, age 72, unknown 57.5
2241 Male, age 72, unknown 46.2
1851 Male, age 51, unknown 42.9
1916 Female, age 42, unknown 42.1
2665 Male, age 74, both hemispheres 41.5
1889 Female, age 72, unknown 40.8
1941 Male, age 53, unknown 39.3
2699 Male, age 18, unknown 38.9
2583 Male, age 75, right hemisphere 38.8
2590 Female, age 75, unknown 35.0
Superior colliculus
nTPM: 40.4
1913 Female, age 42, unknown 46.9
1895 Male, age 76, right hemisphere 43.7
1995 Male, age 72, unknown 42.7
2668 Female, age 75, unknown 42.2
1839 Male, age 51, unknown 40.1
2261 Male, age 18, unknown 39.7
2587 Male, age 74, left hemisphere 38.9
2087 Female, age 72, unknown 38.4
1796 Male, age 53, unknown 36.9
2664 Male, age 75, both hemispheres 34.6
Ventral tegmental area
nTPM: 41.5
2021 Male, age 53, unknown 45.3
1942 Male, age 51, unknown 43.7
1915 Female, age 42, unknown 42.0
2410 Female, age 72, unknown 40.1
2223 Female, age 72, unknown 39.8
2218 Male, age 76, both hemispheres 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.2
Samples: 139

Max nTPM: 94.6
Min nTPM: 25.5
Std nTPM: 9.1
Median nTPM: 39.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 94.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 67.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 66.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 65.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 56.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 54.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 54.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 54.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 54.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 54.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.7
Samples: 4

Max nTPM: 91.5
Min nTPM: 77.7
Sample A Female 91.5
Sample B Female 82.1
Sample C Male 77.7
Sample D Male 83.5
Midbrain
nTPM: 79.5
Samples: 4

Max nTPM: 123.5
Min nTPM: 57.4
Sample A Female 123.5
Sample B Female 78.3
Sample C Male 58.7
Sample D Male 57.4
Periaqueductal gray
nTPM: 68.1
Samples: 3

Max nTPM: 70.2
Min nTPM: 67.0
Sample B Female 67.2
Sample C Male 70.2
Sample D Male 67.0
Superior colliculi
nTPM: 68.0
Samples: 4

Max nTPM: 75.8
Min nTPM: 61.7
Sample A Female 75.8
Sample B Female 67.8
Sample C Male 61.7
Sample D Male 66.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 63.7
Min nTPM: 58.9
Sample A Male 63.7
Sample B Male 59.4
Sample C Female 61.5
Sample D Female 58.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
2491 Antisense, RP_040507_01_C08, Mouse strain C57BL/6J (56 days, male) 0.4
2492 Antisense, RP_040507_01_C08, Mouse strain C57BL/6J (56 days, male) 0.1

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