HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:50.5 nTPM
GTEx:22.3 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:12.8 nTPM
Allen mouse:2.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037751Antibody HPA037752
Glial cells HighLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.5
Sample id Sample description nTPM
Hippocampus
nTPM: 38.5
2529 Female, age 94, left hemisphere 42.9
1911 Female, age 85, right hemisphere 42.3
2148 Female, age 91, left hemisphere 41.6
2621 Female, age 67, right hemisphere 39.2
1855 Male, age 76, left hemisphere 33.4
1898 Male, age 80, left hemisphere 31.4
Dentate gyrus
nTPM: 38.5
2530 Female, age 94, left hemisphere 43.8
2010 Male, age 76, both hemispheres 42.8
2531 Female, age 67, both hemispheres 39.8
2528 Male, age 74, both hemispheres 35.4
1927 Female, age 91, both hemispheres 34.6
2246 Female, age 85, both hemispheres 34.6
Entorhinal gyrus
nTPM: 43.2
2117 Female, age 91, right hemisphere 62.8
2764 Male, age 80, right hemisphere 49.7
2613 Female, age 94, left hemisphere 43.0
2686 Male, age 75, right hemisphere 38.6
1787 Male, age 76, left hemisphere 33.1
1938 Female, age 85, left hemisphere 32.1
Hippocampus, CA1
nTPM: 37.0
2749 Male, age 80, left hemisphere 41.8
2045 Male, age 76, both hemispheres 40.6
2082 Female, age 91, right hemisphere 38.9
2527 Male, age 74, both hemispheres 32.4
1873 Female, age 85, both hemispheres 31.4
Hippocampus, CA2
nTPM: 41.0
1963 Male, age 80, left hemisphere 48.8
2437 Female, age 94, left hemisphere 47.7
1940 Female, age 85, left hemisphere 45.9
2113 Female, age 91, right hemisphere 40.8
1892 Male, age 76, both hemispheres 31.7
2249 Male, age 74, both hemispheres 31.4
Hippocampus, CA3
nTPM: 39.7
1891 Female, age 85, both hemispheres 50.3
1867 Male, age 76, both hemispheres 48.0
2137 Male, age 80, left hemisphere 43.6
2620 Female, age 94, left hemisphere 34.8
2436 Male, age 74, both hemispheres 32.4
2861 Female, age 67, both hemispheres 28.9
Parahippocampal cortex
nTPM: 37.0
2532 Female, age 72, left hemisphere 47.9
1990 Female, age 91, right hemisphere 42.8
2018 Male, age 76, both hemispheres 42.1
2692 Male, age 74, both hemispheres 41.1
2245 Female, age 91, both hemispheres 37.3
1933 Female, age 85, both hemispheres 34.5
2693 Female, age 94, both hemispheres 33.4
1850 Male, age 80, both hemispheres 32.4
2622 Female, age 67, right hemisphere 31.5
2250 Female, age 67, right hemisphere 26.8
Perirhinal gyrus
nTPM: 29.3
2521 Female, age 94, right hemisphere 33.3
1794 Male, age 80, right hemisphere 28.8
2848 Male, age 76, right hemisphere 28.7
1847 Female, age 91, left hemisphere 28.5
1841 Female, age 85, right hemisphere 27.2
Subiculum
nTPM: 50.5
2042 Male, age 76, both hemispheres 63.1
1901 Male, age 80, both hemispheres 58.4
2438 Female, age 94, left hemisphere 55.7
1977 Female, age 85, both hemispheres 43.1
2729 Female, age 91, right hemisphere 42.0
2619 Male, age 74, both hemispheres 40.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.3
Samples: 197

Max nTPM: 73.6
Min nTPM: 5.8
Std nTPM: 10.2
Median nTPM: 20.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 73.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 64.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 56.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 54.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 46.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 45.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 44.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 44.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 43.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 42.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 41.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.3
FF:10153-102I9 76 years, female 36.1
FF:10169-103B7 60 years, female 12.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Subiculum
nTPM: 11.4
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.8
Sample A Female 14.5
Sample B Female 11.0
Sample C Male 9.8
Sample D Male 10.3
Dorsal hippocampus
nTPM: 16.8
Samples: 4

Max nTPM: 22.7
Min nTPM: 13.1
Sample A Female 22.7
Sample B Female 15.0
Sample C Male 16.3
Sample D Male 13.1
Entorhinal cortex
nTPM: 10.9
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.3
Sample A Female 11.3
Sample B Female 11.1
Sample C Male 11.7
Sample D Male 9.3
Ventral hippocampus
nTPM: 15.5
Samples: 4

Max nTPM: 19.3
Min nTPM: 9.4
Sample A Female 15.6
Sample B Female 9.4
Sample C Male 17.5
Sample D Male 19.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.6
Sample A Male 12.6
Sample B Male 12.2
Sample C Female 10.5
Sample D Female 7.6
Hippocampal formation
nTPM: 12.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 12.8
Sample C Female 16.4
Sample D Female 12.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.0
678692 Antisense, RP_040914_02_D12, Mouse strain C57BL/6J (56 days, male) 2.0

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