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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
51.3
nTPM
FANTOM5:
24.5
Scaled Tags Per Million
Pig:
3.3
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
51.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 50.2
2188
Female, age 91, both hemispheres
53.7
2090
Male, age 80, both hemispheres
51.4
2301
Female, age 85, both hemispheres
50.9
1984
Male, age 76, both hemispheres
44.9
Dorsal cochlear nucleus nTPM: 46.1
2058
Male, age 76, both hemispheres
49.6
2187
Female, age 91, both hemispheres
48.1
2370
Male, age 61, both hemispheres
44.7
2802
Male, age 74, right hemisphere
44.5
2378
Male, age 80, both hemispheres
43.8
Dorsal tegmental nucleus nTPM: 44.2
1936
Male, age 76, left hemisphere
49.3
2083
Male, age 80, both hemispheres
46.0
2326
Male, age 74, both hemispheres
44.2
2358
Male, age 61, both hemispheres
37.4
Dorsolateral tegmental area nTPM: 47.7
2141
Male, age 76, both hemispheres
49.8
2337
Male, age 61, both hemispheres
47.9
2360
Male, age 74, both hemispheres
47.7
2751
Female, age 85, both hemispheres
47.5
2654
Male, age 80, both hemispheres
45.4
Kolliker-Fuse nucleus nTPM: 47.0
2793
Female, age 91, left hemisphere
54.4
2315
Male, age 76, right hemisphere
43.7
2163
Male, age 80, both hemispheres
43.0
Lateral lemniscal nuclei nTPM: 45.2
2320
Female, age 91, left hemisphere
54.6
2453
Male, age 74, right hemisphere
44.9
2746
Female, age 85, left hemisphere
44.4
2169
Male, age 76, both hemispheres
41.3
2036
Male, age 80, both hemispheres
40.9
Lateral parabrachial nucleus nTPM: 47.3
2792
Male, age 76, both hemispheres
51.5
2790
Male, age 61, both hemispheres
49.5
2139
Female, age 85, right hemisphere
44.5
2013
Male, age 80, both hemispheres
43.8
Lateral vestibular nucleus nTPM: 43.4
2311
Male, age 80, both hemispheres
44.3
2184
Male, age 76, both hemispheres
42.5
Locus coeruleus nTPM: 45.8
2788
Male, age 74, unknown
58.9
2162
Male, age 80, both hemispheres
45.8
2317
Female, age 72, unknown
45.6
2014
Male, age 55, unknown
45.1
2720
Male, age 74, both hemispheres
43.5
1980
Male, age 76, both hemispheres
41.7
2123
Female, age 91, both hemispheres
40.3
Medial parabrachial nucleus nTPM: 45.9
2786
Male, age 76, both hemispheres
48.2
2463
Female, age 85, right hemisphere
46.9
2854
Male, age 80, both hemispheres
46.6
2170
Female, age 91, both hemispheres
45.0
2156
Male, age 61, both hemispheres
43.0
Medial periolivary nuclei nTPM: 46.3
2458
Female, age 91, both hemispheres
54.9
2081
Male, age 80, both hemispheres
49.4
2791
Male, age 74, right hemisphere
46.9
2171
Female, age 85, both hemispheres
43.3
2063
Male, age 76, both hemispheres
37.2
Motor facial nucleus nTPM: 46.0
2126
Male, age 61, both hemispheres
51.2
2327
Male, age 80, both hemispheres
49.3
2697
Female, age 85, both hemispheres
48.0
2365
Male, age 74, right hemisphere
44.9
2795
Female, age 91, both hemispheres
43.6
2062
Male, age 76, both hemispheres
38.9
Motor trigeminal nucleus nTPM: 49.1
2321
Female, age 91, both hemispheres
55.9
2079
Male, age 80, both hemispheres
50.9
2309
Male, age 76, both hemispheres
50.3
2560
Male, age 74, both hemispheres
46.6
2335
Male, age 61, both hemispheres
41.7
Nuclei of the trapezoid body nTPM: 46.5
2166
Male, age 80, both hemispheres
53.8
2368
Female, age 91, both hemispheres
49.5
2159
Male, age 61, both hemispheres
46.3
2735
Female, age 85, both hemispheres
43.7
1983
Male, age 76, both hemispheres
39.2
Nucleus raphe magnus nTPM: 45.6
2459
Female, age 91, both hemispheres
51.0
2328
Male, age 80, both hemispheres
49.3
2172
Female, age 85, both hemispheres
45.8
2051
Male, age 76, both hemispheres
44.6
2455
Male, age 74, both hemispheres
42.2
2160
Male, age 61, both hemispheres
40.9
Paramedian reticular nucleus nTPM: 46.3
2052
Male, age 76, both hemispheres
52.8
2057
Male, age 80, both hemispheres
46.6
2313
Male, age 61, both hemispheres
46.5
2050
Female, age 85, both hemispheres
39.2
Pedunculopontine tegmental nucleus nTPM: 44.8
2338
Male, age 61, both hemispheres
46.7
2334
Male, age 80, both hemispheres
44.3
1921
Female, age 85, both hemispheres
43.4
Pontine nuclei nTPM: 46.6
2454
Male, age 74, left hemisphere
54.6
2115
Male, age 80, left hemisphere
52.8
2319
Female, age 91, both hemispheres
51.4
2109
Female, age 72, unknown
45.8
2727
Male, age 61, right hemisphere
45.7
1968
Male, age 76, left hemisphere
44.1
1863
Male, age 55, unknown
39.3
2787
Female, age 85, both hemispheres
39.0
Pontine raphe nucleus nTPM: 47.5
2853
Male, age 76, midline
51.7
2122
Female, age 85, midline
43.2
Posteroventral cochlear nucleus nTPM: 49.2
2135
Female, age 91, both hemispheres
59.3
2070
Male, age 76, both hemispheres
49.9
2371
Male, age 61, both hemispheres
47.0
2341
Male, age 80, both hemispheres
45.2
2752
Female, age 85, both hemispheres
44.8
Principal sensory trigeminal nucleus nTPM: 47.3
2367
Female, age 91, left hemisphere
51.1
2324
Male, age 76, both hemispheres
48.3
2008
Male, age 80, left hemisphere
46.5
2158
Male, age 61, both hemispheres
43.5
Reticular pontine nucleus, caudal nTPM: 51.3
2559
Male, age 74, both hemispheres
58.2
2457
Female, age 91, both hemispheres
54.2
2092
Male, age 76, both hemispheres
46.5
2332
Male, age 80, right hemisphere
46.2
Reticular pontine nucleus, oral nTPM: 49.4
2366
Female, age 91, both hemispheres
57.2
2167
Male, age 76, both hemispheres
50.4
1939
Male, age 80, both hemispheres
49.1
2361
Male, age 74, both hemispheres
48.8
2012
Female, age 85, both hemispheres
41.8
Reticulotegmental nucleus nTPM: 45.9
2325
Male, age 76, both hemispheres
48.7
2322
Female, age 91, both hemispheres
46.7
2452
Male, age 74, both hemispheres
44.9
2333
Male, age 80, both hemispheres
43.2
Spinal trigeminal nucleus, oral nTPM: 44.6
1978
Male, age 76, both hemispheres
49.0
2164
Male, age 80, both hemispheres
44.0
2737
Female, age 85, both hemispheres
40.9
Subcoeruleus area nTPM: 46.4
2089
Male, age 76, left hemisphere
52.1
2369
Female, age 85, left hemisphere
48.8
1958
Male, age 80, both hemispheres
45.3
2451
Male, age 74, both hemispheres
45.0
2323
Female, age 91, left hemisphere
40.7
Superior olive nTPM: 46.8
2329
Male, age 80, right hemisphere
54.4
2561
Female, age 91, both hemispheres
52.3
2020
Male, age 76, both hemispheres
44.5
1875
Female, age 85, both hemispheres
43.1
2364
Male, age 74, right hemisphere
39.9
Ventral periolivary nuclei nTPM: 47.0
2794
Female, age 91, left hemisphere
52.6
2130
Female, age 85, both hemispheres
46.9
2165
Male, age 80, both hemispheres
46.0
2023
Male, age 76, both hemispheres
42.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 45.9
2456
Female, age 91, both hemispheres
48.2
2359
Male, age 61, both hemispheres
47.1
1959
Male, age 76, both hemispheres
46.0
2840
Female, age 85, both hemispheres
45.6
2161
Male, age 80, both hemispheres
45.2
2449
Male, age 74, both hemispheres
43.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
