MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.8 nTPM
HPA Brain:146.5 nTPM
GTEx:47.8 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:125.5 nTPM
Mouse:69.9 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 146.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.0
2219 Male, age 76, both hemispheres 149.8
2019 Male, age 18, unknown 140.8
2666 Male, age 74, left hemisphere 140.8
1870 Female, age 42, unknown 134.0
2411 Female, age 72, unknown 132.8
1830 Male, age 51, unknown 130.1
1833 Male, age 53, unknown 130.0
2586 Male, age 75, left hemisphere 127.2
2828 Female, age 72, unknown 121.6
1827 Male, age 72, unknown 112.6
Dorsal raphe nucleus
nTPM: 103.6
2750 Male, age 76, both hemispheres 147.3
1828 Male, age 53, unknown 104.9
2047 Male, age 72, unknown 95.2
2298 Female, age 72, unknown 90.7
2016 Female, age 72, unknown 79.7
Inferior colliculus
nTPM: 112.1
1848 Female, age 42, unknown 119.4
2849 Male, age 72, unknown 116.0
2097 Female, age 72, unknown 108.5
1890 Male, age 53, unknown 104.4
Median raphe nucleus
nTPM: 115.9
2220 Male, age 76, midline 115.9
Periaquaductal grey, anterior
nTPM: 97.2
1947 Male, age 18, unknown 102.7
1795 Male, age 51, unknown 97.5
2502 Female, age 75, unknown 91.3
Periaquaductal grey, dorsal
nTPM: 83.6
2464 Female, age 72, unknown 98.2
1831 Male, age 72, unknown 98.1
1840 Male, age 53, unknown 77.9
2850 Male, age 76, both hemispheres 60.2
Periaquaductal grey, lateral
nTPM: 76.4
2053 Male, age 18, unknown 83.6
2272 Male, age 74, both hemispheres 81.9
2140 Male, age 76, both hemispheres 63.6
Pretectal area
nTPM: 113.6
1817 Female, age 42, unknown 137.2
2007 Male, age 72, unknown 137.0
1815 Male, age 53, unknown 129.6
1816 Male, age 51, unknown 126.7
2407 Male, age 75, both hemispheres 124.7
1944 Female, age 72, unknown 117.2
2316 Male, age 76, right hemisphere 115.6
2667 Female, age 75, unknown 108.7
2825 Male, age 18, unknown 97.4
2224 Female, age 72, unknown 90.1
2273 Male, age 74, both hemispheres 65.9
Red nucleus
nTPM: 146.5
1904 Male, age 53, unknown 169.7
2785 Male, age 18, unknown 163.5
1865 Male, age 51, unknown 153.2
2584 Male, age 75, left hemisphere 151.6
1821 Female, age 72, unknown 150.3
2823 Male, age 76, right hemisphere 149.8
2769 Male, age 72, unknown 147.1
2227 Male, age 72, unknown 146.8
2503 Female, age 72, unknown 139.3
2588 Male, age 74, left hemisphere 137.6
1954 Female, age 42, unknown 132.2
2725 Female, age 75, unknown 117.3
Substantia nigra
nTPM: 116.6
1889 Female, age 72, unknown 140.8
2583 Male, age 75, right hemisphere 133.7
1916 Female, age 42, unknown 130.8
1851 Male, age 51, unknown 124.5
2409 Female, age 72, unknown 113.4
2665 Male, age 74, both hemispheres 112.4
1941 Male, age 53, unknown 112.1
2590 Female, age 75, unknown 102.0
2699 Male, age 18, unknown 99.4
2241 Male, age 72, unknown 96.5
Superior colliculus
nTPM: 126.0
2668 Female, age 75, unknown 190.4
1913 Female, age 42, unknown 139.1
1895 Male, age 76, right hemisphere 135.5
1796 Male, age 53, unknown 127.7
2087 Female, age 72, unknown 121.6
1995 Male, age 72, unknown 119.4
2261 Male, age 18, unknown 117.8
1839 Male, age 51, unknown 108.2
2587 Male, age 74, left hemisphere 105.5
2664 Male, age 75, both hemispheres 95.2
Ventral tegmental area
nTPM: 122.5
2223 Female, age 72, unknown 150.6
2410 Female, age 72, unknown 137.7
2218 Male, age 76, both hemispheres 123.7
1915 Female, age 42, unknown 115.2
1942 Male, age 51, unknown 108.7
2021 Male, age 53, unknown 98.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.8
Samples: 139

Max nTPM: 115.2
Min nTPM: 15.7
Std nTPM: 15.5
Median nTPM: 47.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 115.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 109.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 89.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 85.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 79.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 78.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 75.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 73.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 67.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 125.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.0
Samples: 4

Max nTPM: 120.0
Min nTPM: 57.6
Sample A Female 102.7
Sample B Female 57.6
Sample C Male 95.6
Sample D Male 120.0
Midbrain
nTPM: 125.5
Samples: 4

Max nTPM: 175.8
Min nTPM: 86.0
Sample A Female 175.8
Sample B Female 86.0
Sample C Male 134.0
Sample D Male 106.1
Periaqueductal gray
nTPM: 72.2
Samples: 3

Max nTPM: 75.5
Min nTPM: 68.9
Sample B Female 75.5
Sample C Male 72.2
Sample D Male 68.9
Superior colliculi
nTPM: 101.1
Samples: 4

Max nTPM: 130.1
Min nTPM: 48.9
Sample A Female 107.7
Sample B Female 48.9
Sample C Male 117.6
Sample D Male 130.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.9
Samples: 4

Max nTPM: 73.7
Min nTPM: 65.8
Sample A Male 66.3
Sample B Male 65.8
Sample C Female 73.7
Sample D Female 73.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
74359628 Antisense, RP_060207_01_B08, Mouse strain C57BL/6J (56 days, male) 8.1
74635590 Antisense, RP_060215_04_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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