MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.2 nTPM
HPA Brain:154.7 nTPM
GTEx:104.2 nTPM
FANTOM5:113.2 Scaled Tags Per Million
Pig:103.9 nTPM
Mouse:119.5 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 154.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.7
1827 Male, age 72, unknown 156.1
2586 Male, age 75, left hemisphere 148.4
2219 Male, age 76, both hemispheres 145.3
2666 Male, age 74, left hemisphere 143.3
2828 Female, age 72, unknown 129.2
1833 Male, age 53, unknown 112.7
2411 Female, age 72, unknown 108.0
1830 Male, age 51, unknown 105.2
1870 Female, age 42, unknown 105.1
2019 Male, age 18, unknown 103.8
Dorsal raphe nucleus
nTPM: 112.3
2047 Male, age 72, unknown 128.2
2750 Male, age 76, both hemispheres 118.7
2298 Female, age 72, unknown 113.2
1828 Male, age 53, unknown 104.4
2016 Female, age 72, unknown 97.3
Inferior colliculus
nTPM: 125.6
2097 Female, age 72, unknown 135.3
1848 Female, age 42, unknown 123.4
1890 Male, age 53, unknown 122.6
2849 Male, age 72, unknown 121.3
Median raphe nucleus
nTPM: 150.3
2220 Male, age 76, midline 150.3
Periaquaductal grey, anterior
nTPM: 152.1
1947 Male, age 18, unknown 169.3
1795 Male, age 51, unknown 146.2
2502 Female, age 75, unknown 140.8
Periaquaductal grey, dorsal
nTPM: 113.0
1840 Male, age 53, unknown 130.2
2464 Female, age 72, unknown 118.5
1831 Male, age 72, unknown 117.7
2850 Male, age 76, both hemispheres 85.5
Periaquaductal grey, lateral
nTPM: 104.0
2053 Male, age 18, unknown 119.1
2140 Male, age 76, both hemispheres 100.7
2272 Male, age 74, both hemispheres 92.0
Pretectal area
nTPM: 131.6
1816 Male, age 51, unknown 176.9
2407 Male, age 75, both hemispheres 161.1
1944 Female, age 72, unknown 149.7
2007 Male, age 72, unknown 143.2
1815 Male, age 53, unknown 134.1
1817 Female, age 42, unknown 129.1
2224 Female, age 72, unknown 123.5
2825 Male, age 18, unknown 119.4
2316 Male, age 76, right hemisphere 114.3
2667 Female, age 75, unknown 110.5
2273 Male, age 74, both hemispheres 85.9
Red nucleus
nTPM: 102.0
2584 Male, age 75, left hemisphere 159.4
2725 Female, age 75, unknown 109.2
2588 Male, age 74, left hemisphere 103.3
2785 Male, age 18, unknown 98.8
1954 Female, age 42, unknown 98.2
1904 Male, age 53, unknown 97.6
2227 Male, age 72, unknown 96.9
2503 Female, age 72, unknown 95.4
1821 Female, age 72, unknown 95.2
1865 Male, age 51, unknown 93.8
2769 Male, age 72, unknown 91.9
2823 Male, age 76, right hemisphere 84.6
Substantia nigra
nTPM: 154.7
1916 Female, age 42, unknown 184.9
2590 Female, age 75, unknown 174.2
2665 Male, age 74, both hemispheres 166.6
1851 Male, age 51, unknown 166.5
1941 Male, age 53, unknown 161.0
2409 Female, age 72, unknown 142.9
2699 Male, age 18, unknown 141.2
1889 Female, age 72, unknown 139.9
2241 Male, age 72, unknown 136.3
2583 Male, age 75, right hemisphere 134.0
Superior colliculus
nTPM: 130.5
2664 Male, age 75, both hemispheres 155.6
1796 Male, age 53, unknown 148.3
2087 Female, age 72, unknown 145.8
2261 Male, age 18, unknown 144.4
1895 Male, age 76, right hemisphere 144.1
2668 Female, age 75, unknown 132.5
1839 Male, age 51, unknown 115.7
2587 Male, age 74, left hemisphere 110.1
1913 Female, age 42, unknown 106.3
1995 Male, age 72, unknown 102.1
Ventral tegmental area
nTPM: 134.4
2218 Male, age 76, both hemispheres 153.8
1915 Female, age 42, unknown 145.1
2410 Female, age 72, unknown 142.8
1942 Male, age 51, unknown 132.3
2223 Female, age 72, unknown 118.1
2021 Male, age 53, unknown 114.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.2
Samples: 139

Max nTPM: 210.2
Min nTPM: 34.2
Std nTPM: 38.7
Median nTPM: 98.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 210.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 206.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 191.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 186.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 184.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 176.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 173.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 173.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 172.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 172.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 168.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.2
FF:10158-103A5 76 years, female 113.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.5
Samples: 4

Max nTPM: 113.1
Min nTPM: 67.3
Sample A Female 101.1
Sample B Female 72.5
Sample C Male 113.1
Sample D Male 67.3
Midbrain
nTPM: 103.1
Samples: 4

Max nTPM: 153.2
Min nTPM: 61.6
Sample A Female 61.6
Sample B Female 83.9
Sample C Male 153.2
Sample D Male 113.6
Periaqueductal gray
nTPM: 79.1
Samples: 3

Max nTPM: 96.3
Min nTPM: 66.7
Sample B Female 74.2
Sample C Male 96.3
Sample D Male 66.7
Superior colliculi
nTPM: 103.9
Samples: 4

Max nTPM: 124.7
Min nTPM: 72.4
Sample A Female 108.3
Sample B Female 72.4
Sample C Male 124.7
Sample D Male 110.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.5
Samples: 4

Max nTPM: 126.2
Min nTPM: 111.9
Sample A Male 122.6
Sample B Male 111.9
Sample C Female 117.2
Sample D Female 126.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
69838381 Antisense, RP_050301_02_G07, Mouse strain C57BL/6J (56 days, male) 9.1

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