MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.7 nTPM
HPA Brain:89.7 nTPM
GTEx:36.7 nTPM
FANTOM5:103.5 Scaled Tags Per Million
Pig:98.1 nTPM
Mouse:105.8 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.9
1870 Female, age 42, unknown 105.2
2586 Male, age 75, left hemisphere 103.7
1830 Male, age 51, unknown 91.8
1833 Male, age 53, unknown 88.5
2411 Female, age 72, unknown 87.4
2828 Female, age 72, unknown 83.4
2666 Male, age 74, left hemisphere 73.5
2019 Male, age 18, unknown 72.3
1827 Male, age 72, unknown 66.6
2219 Male, age 76, both hemispheres 56.9
Dorsal raphe nucleus
nTPM: 80.2
2750 Male, age 76, both hemispheres 100.2
1828 Male, age 53, unknown 82.5
2016 Female, age 72, unknown 78.8
2047 Male, age 72, unknown 74.0
2298 Female, age 72, unknown 65.8
Inferior colliculus
nTPM: 69.9
2849 Male, age 72, unknown 73.7
1890 Male, age 53, unknown 72.3
1848 Female, age 42, unknown 70.7
2097 Female, age 72, unknown 62.7
Median raphe nucleus
nTPM: 56.3
2220 Male, age 76, midline 56.3
Periaquaductal grey, anterior
nTPM: 64.8
2502 Female, age 75, unknown 70.4
1947 Male, age 18, unknown 67.2
1795 Male, age 51, unknown 56.9
Periaquaductal grey, dorsal
nTPM: 59.4
2464 Female, age 72, unknown 68.0
1840 Male, age 53, unknown 57.0
1831 Male, age 72, unknown 56.4
2850 Male, age 76, both hemispheres 56.3
Periaquaductal grey, lateral
nTPM: 61.4
2053 Male, age 18, unknown 72.9
2272 Male, age 74, both hemispheres 60.1
2140 Male, age 76, both hemispheres 51.3
Pretectal area
nTPM: 61.1
2825 Male, age 18, unknown 76.1
2667 Female, age 75, unknown 72.1
2407 Male, age 75, both hemispheres 71.0
2316 Male, age 76, right hemisphere 64.6
2273 Male, age 74, both hemispheres 64.2
1815 Male, age 53, unknown 62.9
2224 Female, age 72, unknown 58.3
1944 Female, age 72, unknown 53.7
1817 Female, age 42, unknown 53.5
2007 Male, age 72, unknown 50.4
1816 Male, age 51, unknown 45.7
Red nucleus
nTPM: 89.7
2769 Male, age 72, unknown 106.2
2227 Male, age 72, unknown 103.3
1865 Male, age 51, unknown 100.6
1904 Male, age 53, unknown 93.4
2584 Male, age 75, left hemisphere 93.0
1821 Female, age 72, unknown 92.5
1954 Female, age 42, unknown 87.7
2588 Male, age 74, left hemisphere 85.8
2823 Male, age 76, right hemisphere 83.6
2503 Female, age 72, unknown 83.0
2725 Female, age 75, unknown 75.6
2785 Male, age 18, unknown 71.4
Substantia nigra
nTPM: 66.9
2699 Male, age 18, unknown 81.7
2583 Male, age 75, right hemisphere 77.1
1851 Male, age 51, unknown 76.0
1916 Female, age 42, unknown 69.3
1889 Female, age 72, unknown 66.9
1941 Male, age 53, unknown 66.0
2409 Female, age 72, unknown 64.3
2241 Male, age 72, unknown 59.5
2590 Female, age 75, unknown 58.8
2665 Male, age 74, both hemispheres 50.0
Superior colliculus
nTPM: 72.3
1913 Female, age 42, unknown 106.0
1995 Male, age 72, unknown 89.4
1839 Male, age 51, unknown 73.4
2587 Male, age 74, left hemisphere 73.4
2664 Male, age 75, both hemispheres 73.0
2668 Female, age 75, unknown 72.5
1796 Male, age 53, unknown 65.4
1895 Male, age 76, right hemisphere 60.5
2087 Female, age 72, unknown 57.7
2261 Male, age 18, unknown 51.5
Ventral tegmental area
nTPM: 76.3
2223 Female, age 72, unknown 101.5
2410 Female, age 72, unknown 83.9
1942 Male, age 51, unknown 74.8
2021 Male, age 53, unknown 66.9
2218 Male, age 76, both hemispheres 66.0
1915 Female, age 42, unknown 64.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.7
Samples: 139

Max nTPM: 136.9
Min nTPM: 13.8
Std nTPM: 14.5
Median nTPM: 35.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 136.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 75.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 71.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 67.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 61.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 60.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 59.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 57.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 56.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.5
FF:10158-103A5 76 years, female 103.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.1
Samples: 4

Max nTPM: 144.8
Min nTPM: 63.9
Sample A Female 87.4
Sample B Female 63.9
Sample C Male 96.1
Sample D Male 144.8
Midbrain
nTPM: 91.4
Samples: 4

Max nTPM: 123.8
Min nTPM: 76.3
Sample A Female 123.8
Sample B Female 87.3
Sample C Male 76.3
Sample D Male 78.2
Periaqueductal gray
nTPM: 71.8
Samples: 3

Max nTPM: 81.5
Min nTPM: 66.7
Sample B Female 81.5
Sample C Male 66.7
Sample D Male 67.1
Superior colliculi
nTPM: 95.2
Samples: 4

Max nTPM: 104.4
Min nTPM: 84.1
Sample A Female 102.0
Sample B Female 84.1
Sample C Male 90.4
Sample D Male 104.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 105.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.8
Samples: 4

Max nTPM: 111.8
Min nTPM: 97.8
Sample A Male 111.8
Sample B Male 102.3
Sample C Female 97.8
Sample D Female 111.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
1421 Antisense, RP_040420_01_H02, Mouse strain C57BL/6J (56 days, male) 3.0
1420 Antisense, RP_040420_01_H02, Mouse strain C57BL/6J (56 days, male) 0.5

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