MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.1 nTPM
HPA Brain:3.7 nTPM
GTEx:8.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.6
1827 Male, age 72, unknown 3.1
2666 Male, age 74, left hemisphere 3.1
1830 Male, age 51, unknown 2.9
1833 Male, age 53, unknown 2.9
2219 Male, age 76, both hemispheres 2.8
2586 Male, age 75, left hemisphere 2.7
2828 Female, age 72, unknown 2.5
2019 Male, age 18, unknown 2.4
2411 Female, age 72, unknown 2.1
1870 Female, age 42, unknown 1.6
Dorsal raphe nucleus
nTPM: 3.2
2298 Female, age 72, unknown 3.4
2047 Male, age 72, unknown 3.3
2750 Male, age 76, both hemispheres 3.1
1828 Male, age 53, unknown 3.0
2016 Female, age 72, unknown 3.0
Inferior colliculus
nTPM: 2.6
1848 Female, age 42, unknown 3.0
2097 Female, age 72, unknown 2.6
2849 Male, age 72, unknown 2.5
1890 Male, age 53, unknown 2.3
Median raphe nucleus
nTPM: 2.8
2220 Male, age 76, midline 2.8
Periaquaductal grey, anterior
nTPM: 3.4
1947 Male, age 18, unknown 4.2
2502 Female, age 75, unknown 3.5
1795 Male, age 51, unknown 2.5
Periaquaductal grey, dorsal
nTPM: 3.7
1831 Male, age 72, unknown 4.3
2850 Male, age 76, both hemispheres 4.3
1840 Male, age 53, unknown 3.6
2464 Female, age 72, unknown 2.7
Periaquaductal grey, lateral
nTPM: 2.4
2053 Male, age 18, unknown 2.7
2140 Male, age 76, both hemispheres 2.7
2272 Male, age 74, both hemispheres 1.9
Pretectal area
nTPM: 2.9
1944 Female, age 72, unknown 3.7
2224 Female, age 72, unknown 3.2
2316 Male, age 76, right hemisphere 3.2
1815 Male, age 53, unknown 3.1
2007 Male, age 72, unknown 3.0
2407 Male, age 75, both hemispheres 2.9
1816 Male, age 51, unknown 2.6
2667 Female, age 75, unknown 2.6
2825 Male, age 18, unknown 2.6
1817 Female, age 42, unknown 2.4
2273 Male, age 74, both hemispheres 2.3
Red nucleus
nTPM: 2.6
2823 Male, age 76, right hemisphere 3.5
2584 Male, age 75, left hemisphere 3.3
2503 Female, age 72, unknown 3.0
1865 Male, age 51, unknown 2.8
1904 Male, age 53, unknown 2.8
1954 Female, age 42, unknown 2.8
1821 Female, age 72, unknown 2.7
2769 Male, age 72, unknown 2.5
2785 Male, age 18, unknown 2.3
2588 Male, age 74, left hemisphere 2.0
2227 Male, age 72, unknown 1.9
2725 Female, age 75, unknown 1.8
Substantia nigra
nTPM: 3.2
2241 Male, age 72, unknown 3.9
2409 Female, age 72, unknown 3.5
1851 Male, age 51, unknown 3.4
2590 Female, age 75, unknown 3.4
1916 Female, age 42, unknown 3.3
2699 Male, age 18, unknown 3.1
2583 Male, age 75, right hemisphere 2.9
1889 Female, age 72, unknown 2.8
1941 Male, age 53, unknown 2.8
2665 Male, age 74, both hemispheres 2.4
Superior colliculus
nTPM: 2.8
2668 Female, age 75, unknown 3.6
1895 Male, age 76, right hemisphere 3.1
2087 Female, age 72, unknown 3.1
1913 Female, age 42, unknown 2.9
2587 Male, age 74, left hemisphere 2.9
2664 Male, age 75, both hemispheres 2.7
1796 Male, age 53, unknown 2.6
1839 Male, age 51, unknown 2.6
2261 Male, age 18, unknown 2.5
1995 Male, age 72, unknown 1.9
Ventral tegmental area
nTPM: 3.0
1942 Male, age 51, unknown 3.6
2021 Male, age 53, unknown 3.5
2218 Male, age 76, both hemispheres 3.2
2410 Female, age 72, unknown 2.9
2223 Female, age 72, unknown 2.5
1915 Female, age 42, unknown 2.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.1
Samples: 139

Max nTPM: 289.2
Min nTPM: 0.0
Std nTPM: 27.2
Median nTPM: 2.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 289.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 93.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 74.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 59.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 55.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 37.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 34.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 34.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 23.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org