HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:27.1 nTPM
GTEx:9.7 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:14.6 nTPM
Allen mouse:4.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006688
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Hippocampus
nTPM: 23.2
2148 Female, age 91, left hemisphere 26.6
2621 Female, age 67, right hemisphere 24.1
1855 Male, age 76, left hemisphere 23.5
2529 Female, age 94, left hemisphere 22.9
1911 Female, age 85, right hemisphere 21.1
1898 Male, age 80, left hemisphere 20.7
Dentate gyrus
nTPM: 22.0
2531 Female, age 67, both hemispheres 25.9
1927 Female, age 91, both hemispheres 24.5
2246 Female, age 85, both hemispheres 21.8
2530 Female, age 94, left hemisphere 21.6
2528 Male, age 74, both hemispheres 19.5
2010 Male, age 76, both hemispheres 18.9
Entorhinal gyrus
nTPM: 27.1
2613 Female, age 94, left hemisphere 33.9
2686 Male, age 75, right hemisphere 30.4
2764 Male, age 80, right hemisphere 28.7
1787 Male, age 76, left hemisphere 26.1
1938 Female, age 85, left hemisphere 21.9
2117 Female, age 91, right hemisphere 21.4
Hippocampus, CA1
nTPM: 22.3
2082 Female, age 91, right hemisphere 24.9
2749 Male, age 80, left hemisphere 22.8
2045 Male, age 76, both hemispheres 22.3
1873 Female, age 85, both hemispheres 20.9
2527 Male, age 74, both hemispheres 20.8
Hippocampus, CA2
nTPM: 22.2
1892 Male, age 76, both hemispheres 24.6
2437 Female, age 94, left hemisphere 24.2
2113 Female, age 91, right hemisphere 23.5
1963 Male, age 80, left hemisphere 22.1
1940 Female, age 85, left hemisphere 21.3
2249 Male, age 74, both hemispheres 17.6
Hippocampus, CA3
nTPM: 23.1
2861 Female, age 67, both hemispheres 31.1
2620 Female, age 94, left hemisphere 28.0
2137 Male, age 80, left hemisphere 21.7
1867 Male, age 76, both hemispheres 20.3
1891 Female, age 85, both hemispheres 19.9
2436 Male, age 74, both hemispheres 17.5
Parahippocampal cortex
nTPM: 24.9
2622 Female, age 67, right hemisphere 30.0
2245 Female, age 91, both hemispheres 26.6
2693 Female, age 94, both hemispheres 25.9
2692 Male, age 74, both hemispheres 25.0
2532 Female, age 72, left hemisphere 24.9
1990 Female, age 91, right hemisphere 23.7
1850 Male, age 80, both hemispheres 23.6
1933 Female, age 85, both hemispheres 23.5
2250 Female, age 67, right hemisphere 23.5
2018 Male, age 76, both hemispheres 22.1
Perirhinal gyrus
nTPM: 25.9
1847 Female, age 91, left hemisphere 27.4
2848 Male, age 76, right hemisphere 26.8
1794 Male, age 80, right hemisphere 26.3
2521 Female, age 94, right hemisphere 26.0
1841 Female, age 85, right hemisphere 22.9
Subiculum
nTPM: 21.9
2438 Female, age 94, left hemisphere 24.4
2619 Male, age 74, both hemispheres 23.0
1977 Female, age 85, both hemispheres 22.3
2729 Female, age 91, right hemisphere 22.1
1901 Male, age 80, both hemispheres 20.3
2042 Male, age 76, both hemispheres 19.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.7
Samples: 197

Max nTPM: 15.1
Min nTPM: 3.8
Std nTPM: 2.3
Median nTPM: 9.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 15.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 15.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 15.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 14.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 14.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 14.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 14.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 14.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 13.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 13.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 13.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.9
FF:10153-102I9 76 years, female 18.3
FF:10169-103B7 60 years, female 15.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Subiculum
nTPM: 11.1
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.1
Sample A Female 14.0
Sample B Female 10.0
Sample C Male 11.2
Sample D Male 9.1
Dorsal hippocampus
nTPM: 8.9
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.5
Sample A Female 9.3
Sample B Female 10.6
Sample C Male 7.5
Sample D Male 8.3
Entorhinal cortex
nTPM: 11.9
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.5
Sample A Female 12.6
Sample B Female 10.5
Sample C Male 13.1
Sample D Male 11.2
Ventral hippocampus
nTPM: 10.1
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.8
Sample A Female 8.9
Sample B Female 8.8
Sample C Male 13.2
Sample D Male 9.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.7
Sample A Male 15.1
Sample B Male 15.4
Sample C Female 14.0
Sample D Female 12.7
Hippocampal formation
nTPM: 14.6
Samples: 4

Max nTPM: 17.2
Min nTPM: 11.6
Sample A Male 14.7
Sample B Male 17.2
Sample C Female 11.6
Sample D Female 14.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.7
69734440 Antisense, RP_050428_04_H09, Mouse strain C57BL/6J (56 days, male) 4.7

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