MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.5 nTPM
HPA Brain:4.5 nTPM
GTEx:2.5 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:19.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.9
2219 Male, age 76, both hemispheres 4.8
2019 Male, age 18, unknown 4.5
1833 Male, age 53, unknown 4.2
2411 Female, age 72, unknown 4.1
1827 Male, age 72, unknown 3.9
2586 Male, age 75, left hemisphere 3.8
1830 Male, age 51, unknown 3.7
1870 Female, age 42, unknown 3.5
2828 Female, age 72, unknown 3.5
2666 Male, age 74, left hemisphere 3.4
Dorsal raphe nucleus
nTPM: 3.8
2750 Male, age 76, both hemispheres 4.1
1828 Male, age 53, unknown 3.9
2298 Female, age 72, unknown 3.9
2016 Female, age 72, unknown 3.7
2047 Male, age 72, unknown 3.5
Inferior colliculus
nTPM: 4.5
2097 Female, age 72, unknown 4.9
1848 Female, age 42, unknown 4.6
2849 Male, age 72, unknown 4.6
1890 Male, age 53, unknown 3.9
Median raphe nucleus
nTPM: 4.1
2220 Male, age 76, midline 4.1
Periaquaductal grey, anterior
nTPM: 3.5
1947 Male, age 18, unknown 3.6
1795 Male, age 51, unknown 3.5
2502 Female, age 75, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 3.8
1840 Male, age 53, unknown 4.6
2850 Male, age 76, both hemispheres 3.9
2464 Female, age 72, unknown 3.5
1831 Male, age 72, unknown 3.4
Periaquaductal grey, lateral
nTPM: 3.8
2272 Male, age 74, both hemispheres 4.0
2140 Male, age 76, both hemispheres 3.8
2053 Male, age 18, unknown 3.7
Pretectal area
nTPM: 3.9
1815 Male, age 53, unknown 4.4
2007 Male, age 72, unknown 4.3
2667 Female, age 75, unknown 4.3
1944 Female, age 72, unknown 4.2
2224 Female, age 72, unknown 4.1
1817 Female, age 42, unknown 4.0
2273 Male, age 74, both hemispheres 4.0
1816 Male, age 51, unknown 3.9
2316 Male, age 76, right hemisphere 3.7
2825 Male, age 18, unknown 3.6
2407 Male, age 75, both hemispheres 2.7
Red nucleus
nTPM: 3.8
1821 Female, age 72, unknown 4.5
2725 Female, age 75, unknown 4.4
2588 Male, age 74, left hemisphere 4.1
2785 Male, age 18, unknown 4.1
2503 Female, age 72, unknown 4.0
1904 Male, age 53, unknown 3.8
2823 Male, age 76, right hemisphere 3.7
2227 Male, age 72, unknown 3.6
2769 Male, age 72, unknown 3.6
1865 Male, age 51, unknown 3.4
1954 Female, age 42, unknown 3.4
2584 Male, age 75, left hemisphere 3.4
Substantia nigra
nTPM: 3.9
2409 Female, age 72, unknown 4.9
2241 Male, age 72, unknown 4.6
1916 Female, age 42, unknown 4.4
1851 Male, age 51, unknown 4.3
1889 Female, age 72, unknown 4.0
2590 Female, age 75, unknown 3.7
1941 Male, age 53, unknown 3.6
2699 Male, age 18, unknown 3.6
2583 Male, age 75, right hemisphere 3.4
2665 Male, age 74, both hemispheres 2.9
Superior colliculus
nTPM: 3.8
1895 Male, age 76, right hemisphere 5.1
1839 Male, age 51, unknown 4.2
1995 Male, age 72, unknown 4.0
2087 Female, age 72, unknown 4.0
1913 Female, age 42, unknown 3.9
2261 Male, age 18, unknown 3.6
2587 Male, age 74, left hemisphere 3.5
1796 Male, age 53, unknown 3.3
2664 Male, age 75, both hemispheres 3.2
2668 Female, age 75, unknown 3.2
Ventral tegmental area
nTPM: 4.3
2410 Female, age 72, unknown 5.2
2218 Male, age 76, both hemispheres 4.6
1915 Female, age 42, unknown 4.2
1942 Male, age 51, unknown 4.2
2021 Male, age 53, unknown 3.9
2223 Female, age 72, unknown 3.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.5
Samples: 139

Max nTPM: 4.4
Min nTPM: 0.5
Std nTPM: 0.6
Median nTPM: 2.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 4.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 3.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 3.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 3.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 3.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 3.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 3.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 3.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.0
FF:10158-103A5 76 years, female 5.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.4
Samples: 4

Max nTPM: 22.0
Min nTPM: 17.9
Sample A Female 19.1
Sample B Female 18.6
Sample C Male 22.0
Sample D Male 17.9
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 26.0
Min nTPM: 19.3
Sample A Female 19.3
Sample B Female 21.1
Sample C Male 19.9
Sample D Male 26.0
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 21.4
Min nTPM: 20.4
Sample B Female 21.4
Sample C Male 21.4
Sample D Male 20.4
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.1
Sample A Female 21.3
Sample B Female 16.1
Sample C Male 16.9
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 20.3
Min nTPM: 18.5
Sample A Male 18.5
Sample B Male 20.3
Sample C Female 20.1
Sample D Female 20.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
72728 Antisense, RP_040407_01_A11, Mouse strain C57BL/6J (56 days, male) 1.4

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