BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA Brain:136.1 nTPM
GTEx:27.5 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:55.9 nTPM
Mouse:53.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 136.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 60.2
2288 Male, age 75, left hemisphere 69.3
2289 Male, age 61, right hemisphere 66.0
1854 Male, age 80, left hemisphere 62.1
1857 Female, age 85, left hemisphere 59.7
1781 Male, age 74, unknown 57.3
2846 Female, age 79, unknown 56.6
2290 Female, age 72, unknown 55.9
2481 Female, age 94, left hemisphere 55.0
Globus pallidus, externus
nTPM: 123.6
2567 Female, age 72, unknown 148.0
2646 Male, age 61, right hemisphere 133.5
1996 Male, age 80, right hemisphere 127.7
2772 Female, age 79, unknown 114.4
2395 Male, age 75, both hemispheres 94.5
Globus pallidus, internus
nTPM: 136.1
2111 Female, age 85, right hemisphere 189.4
2566 Female, age 72, unknown 154.9
2778 Female, age 91, both hemispheres 146.3
2037 Male, age 80, right hemisphere 132.6
1818 Male, age 74, unknown 121.8
2287 Male, age 75, right hemisphere 117.8
2483 Female, age 94, right hemisphere 89.6
Nucleus accumbens
nTPM: 74.1
2391 Female, age 94, left hemisphere 91.2
2732 Male, age 80, right hemisphere 88.6
2698 Female, age 72, unknown 85.1
2824 Male, age 61, right hemisphere 77.7
2286 Male, age 75, left hemisphere 65.9
1806 Female, age 85, left hemisphere 65.3
1783 Male, age 74, unknown 63.6
1856 Female, age 91, right hemisphere 55.6
Nucleus basalis of Meynert
nTPM: 85.1
2569 Male, age 61, both hemispheres 129.6
2821 Male, age 75, both hemispheres 76.3
2393 Male, age 80, right hemisphere 71.5
2484 Female, age 94, left hemisphere 62.8
Nucleus of the diagonal band
nTPM: 50.3
1812 Female, age 91, both hemispheres 58.6
1979 Male, age 74, unknown 56.5
2029 Male, age 61, right hemisphere 53.8
2195 Female, age 85, both hemispheres 43.7
2775 Male, age 80, right hemisphere 39.0
Putamen
nTPM: 68.3
2647 Male, age 75, left hemisphere 89.7
1937 Female, age 91, right hemisphere 72.7
2489 Female, age 72, unknown 70.5
1829 Male, age 74, unknown 69.0
2482 Female, age 94, left hemisphere 67.7
2466 Female, age 79, unknown 55.9
1838 Male, age 80, right hemisphere 52.9
Septal nuclei
nTPM: 56.4
2394 Male, age 61, left hemisphere 83.7
2199 Male, age 80, right hemisphere 70.1
2059 Female, age 85, both hemispheres 60.7
2629 Female, age 94, right hemisphere 50.2
2009 Female, age 91, both hemispheres 46.5
2031 Female, age 72, unknown 43.6
1960 Male, age 74, unknown 39.6
Stria terminalis, bed nucleus
nTPM: 51.8
2201 Male, age 74, unknown 62.9
1974 Female, age 91, both hemispheres 49.8
2486 Female, age 94, both hemispheres 42.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.1
Samples: 246

Max nTPM: 49.6
Min nTPM: 10.3
Std nTPM: 6.1
Median nTPM: 22.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 49.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 47.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 43.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 42.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 41.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 41.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 36.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 36.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 36.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 35.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 68.4
Min nTPM: 3.4
Std nTPM: 8.1
Median nTPM: 19.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 68.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 67.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 59.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 54.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 48.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 44.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 41.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 39.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 36.7
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 35.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 35.2
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Brain - Putamen (basal ganglia)
Average nTPM: 27.5
Samples: 205

Max nTPM: 123.3
Min nTPM: 12.7
Std nTPM: 10.5
Median nTPM: 25.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 123.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 84.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 50.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 49.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 45.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 44.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 43.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 43.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 42.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 42.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 42.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.9
FF:10164-103B2 76 years, female 49.9
Nucleus accumbens
Scaled Tags Per Million: 63.1
FF:10037-101F1 23-56 years, mixed 63.1
Putamen
Scaled Tags Per Million: 42.5
FF:10176-103C5 60 years, female 42.5
Globus pallidus
Scaled Tags Per Million: 87.1
FF:10161-103A8 76 years, female 103.7
FF:10175-103C4 60 years, female 70.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.9
Pig sample Sample description nTPM
Caudate
nTPM: 43.1
Samples: 4

Max nTPM: 47.3
Min nTPM: 35.3
Sample A Female 35.3
Sample B Female 47.3
Sample C Male 46.5
Sample D Male 43.4
Putamen
nTPM: 55.9
Samples: 4

Max nTPM: 65.3
Min nTPM: 46.6
Sample A Female 61.4
Sample B Female 46.6
Sample C Male 50.3
Sample D Male 65.3
Septum
nTPM: 42.8
Samples: 4

Max nTPM: 45.0
Min nTPM: 40.0
Sample A Female 45.0
Sample B Female 42.9
Sample C Male 40.0
Sample D Male 43.2
Ventral pallidum
nTPM: 48.3
Samples: 4

Max nTPM: 56.8
Min nTPM: 39.4
Sample A Female 39.4
Sample B Female 43.9
Sample C Male 56.8
Sample D Male 53.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.8
Samples: 4

Max nTPM: 57.4
Min nTPM: 44.2
Sample A Male 44.2
Sample B Male 48.3
Sample C Female 53.3
Sample D Female 57.4
Septum
nTPM: 53.6
Samples: 4

Max nTPM: 58.2
Min nTPM: 51.1
Sample A Male 53.4
Sample B Male 51.5
Sample C Female 51.1
Sample D Female 58.2
Ventral forebrain
nTPM: 53.5
Samples: 4

Max nTPM: 59.0
Min nTPM: 50.0
Sample A Male 52.8
Sample B Male 50.0
Sample C Female 52.2
Sample D Female 59.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
71493057 Antisense, RP_050913_02_A12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
71493057 Antisense, RP_050913_02_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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