MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:61.1 nTPM
GTEx:3.2 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:69.2 nTPM
Mouse:60.5 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
2666 Male, age 74, left hemisphere 80.5
1827 Male, age 72, unknown 58.7
1870 Female, age 42, unknown 51.7
2219 Male, age 76, both hemispheres 48.7
2828 Female, age 72, unknown 47.7
2411 Female, age 72, unknown 46.5
1830 Male, age 51, unknown 44.9
1833 Male, age 53, unknown 44.3
2019 Male, age 18, unknown 43.8
2586 Male, age 75, left hemisphere 40.0
Dorsal raphe nucleus
nTPM: 55.4
2298 Female, age 72, unknown 66.4
2047 Male, age 72, unknown 59.8
1828 Male, age 53, unknown 54.4
2750 Male, age 76, both hemispheres 49.6
2016 Female, age 72, unknown 46.8
Inferior colliculus
nTPM: 54.7
2097 Female, age 72, unknown 58.4
1890 Male, age 53, unknown 55.1
1848 Female, age 42, unknown 54.4
2849 Male, age 72, unknown 50.9
Median raphe nucleus
nTPM: 61.1
2220 Male, age 76, midline 61.1
Periaquaductal grey, anterior
nTPM: 61.1
1947 Male, age 18, unknown 68.0
1795 Male, age 51, unknown 61.3
2502 Female, age 75, unknown 54.1
Periaquaductal grey, dorsal
nTPM: 51.2
1840 Male, age 53, unknown 57.4
1831 Male, age 72, unknown 53.4
2850 Male, age 76, both hemispheres 49.8
2464 Female, age 72, unknown 44.3
Periaquaductal grey, lateral
nTPM: 49.3
2053 Male, age 18, unknown 59.8
2272 Male, age 74, both hemispheres 45.8
2140 Male, age 76, both hemispheres 42.4
Pretectal area
nTPM: 51.7
1816 Male, age 51, unknown 65.8
2007 Male, age 72, unknown 61.9
2825 Male, age 18, unknown 54.7
1944 Female, age 72, unknown 53.7
2224 Female, age 72, unknown 51.7
1817 Female, age 42, unknown 51.4
1815 Male, age 53, unknown 49.0
2273 Male, age 74, both hemispheres 48.4
2667 Female, age 75, unknown 46.8
2316 Male, age 76, right hemisphere 45.0
2407 Male, age 75, both hemispheres 40.2
Red nucleus
nTPM: 46.9
1821 Female, age 72, unknown 56.8
1954 Female, age 42, unknown 56.2
2588 Male, age 74, left hemisphere 55.9
2725 Female, age 75, unknown 54.7
2584 Male, age 75, left hemisphere 50.1
2503 Female, age 72, unknown 46.6
1904 Male, age 53, unknown 45.8
2769 Male, age 72, unknown 44.1
2227 Male, age 72, unknown 41.9
2785 Male, age 18, unknown 41.3
1865 Male, age 51, unknown 40.0
2823 Male, age 76, right hemisphere 29.2
Substantia nigra
nTPM: 51.1
2665 Male, age 74, both hemispheres 65.8
1889 Female, age 72, unknown 58.1
2241 Male, age 72, unknown 56.0
1916 Female, age 42, unknown 55.3
1941 Male, age 53, unknown 52.3
1851 Male, age 51, unknown 48.6
2583 Male, age 75, right hemisphere 47.9
2409 Female, age 72, unknown 45.5
2590 Female, age 75, unknown 45.2
2699 Male, age 18, unknown 35.8
Superior colliculus
nTPM: 48.0
2261 Male, age 18, unknown 57.8
2668 Female, age 75, unknown 54.9
1796 Male, age 53, unknown 54.0
1895 Male, age 76, right hemisphere 53.2
1839 Male, age 51, unknown 49.1
2087 Female, age 72, unknown 47.3
2587 Male, age 74, left hemisphere 47.2
2664 Male, age 75, both hemispheres 44.8
1913 Female, age 42, unknown 39.2
1995 Male, age 72, unknown 32.4
Ventral tegmental area
nTPM: 48.9
2223 Female, age 72, unknown 61.7
2218 Male, age 76, both hemispheres 48.9
1915 Female, age 42, unknown 48.2
1942 Male, age 51, unknown 48.1
2410 Female, age 72, unknown 43.5
2021 Male, age 53, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 15.8
Min nTPM: 0.0
Std nTPM: 2.5
Median nTPM: 2.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 15.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 12.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 9.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 9.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 8.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 8.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 7.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 71.1
Min nTPM: 38.5
Sample A Female 71.1
Sample B Female 52.0
Sample C Male 55.5
Sample D Male 38.5
Midbrain
nTPM: 69.3
Samples: 4

Max nTPM: 110.3
Min nTPM: 40.9
Sample A Female 40.9
Sample B Female 56.2
Sample C Male 110.3
Sample D Male 69.6
Periaqueductal gray
nTPM: 54.2
Samples: 3

Max nTPM: 61.0
Min nTPM: 49.7
Sample B Female 49.7
Sample C Male 61.0
Sample D Male 52.0
Superior colliculi
nTPM: 69.2
Samples: 4

Max nTPM: 90.2
Min nTPM: 47.2
Sample A Female 66.8
Sample B Female 47.2
Sample C Male 90.2
Sample D Male 72.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 69.3
Min nTPM: 51.9
Sample A Male 51.9
Sample B Male 55.8
Sample C Female 69.3
Sample D Female 65.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69873947 Antisense, RP_050512_02_D02, Mouse strain C57BL/6J (56 days, male) 3.4

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