MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA Brain:19.4 nTPM
GTEx:33.7 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:38.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.3
2586 Male, age 75, left hemisphere 22.9
2019 Male, age 18, unknown 21.9
2411 Female, age 72, unknown 21.0
1827 Male, age 72, unknown 18.7
1870 Female, age 42, unknown 18.7
2666 Male, age 74, left hemisphere 17.7
2828 Female, age 72, unknown 16.5
1833 Male, age 53, unknown 15.8
1830 Male, age 51, unknown 15.3
2219 Male, age 76, both hemispheres 14.3
Dorsal raphe nucleus
nTPM: 18.7
2298 Female, age 72, unknown 24.9
1828 Male, age 53, unknown 19.1
2047 Male, age 72, unknown 18.1
2750 Male, age 76, both hemispheres 16.2
2016 Female, age 72, unknown 15.1
Inferior colliculus
nTPM: 18.2
2097 Female, age 72, unknown 22.0
1890 Male, age 53, unknown 18.1
1848 Female, age 42, unknown 17.8
2849 Male, age 72, unknown 15.0
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 17.6
2502 Female, age 75, unknown 19.5
1795 Male, age 51, unknown 18.3
1947 Male, age 18, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 15.4
1840 Male, age 53, unknown 17.4
2464 Female, age 72, unknown 15.7
1831 Male, age 72, unknown 15.4
2850 Male, age 76, both hemispheres 13.1
Periaquaductal grey, lateral
nTPM: 15.5
2272 Male, age 74, both hemispheres 17.9
2053 Male, age 18, unknown 15.1
2140 Male, age 76, both hemispheres 13.6
Pretectal area
nTPM: 19.4
2007 Male, age 72, unknown 26.1
1817 Female, age 42, unknown 22.8
1816 Male, age 51, unknown 21.9
2667 Female, age 75, unknown 20.7
1944 Female, age 72, unknown 19.8
2273 Male, age 74, both hemispheres 19.2
1815 Male, age 53, unknown 18.7
2224 Female, age 72, unknown 17.4
2825 Male, age 18, unknown 16.3
2316 Male, age 76, right hemisphere 15.2
2407 Male, age 75, both hemispheres 14.9
Red nucleus
nTPM: 19.0
2785 Male, age 18, unknown 24.4
1821 Female, age 72, unknown 23.3
2769 Male, age 72, unknown 21.0
2503 Female, age 72, unknown 19.6
2588 Male, age 74, left hemisphere 18.7
2227 Male, age 72, unknown 18.5
1954 Female, age 42, unknown 18.0
2725 Female, age 75, unknown 18.0
1904 Male, age 53, unknown 17.8
1865 Male, age 51, unknown 17.0
2584 Male, age 75, left hemisphere 16.9
2823 Male, age 76, right hemisphere 15.3
Substantia nigra
nTPM: 18.5
1889 Female, age 72, unknown 21.5
1941 Male, age 53, unknown 21.1
1851 Male, age 51, unknown 20.8
2665 Male, age 74, both hemispheres 20.8
1916 Female, age 42, unknown 20.7
2583 Male, age 75, right hemisphere 18.4
2409 Female, age 72, unknown 16.3
2241 Male, age 72, unknown 16.0
2699 Male, age 18, unknown 15.4
2590 Female, age 75, unknown 14.4
Superior colliculus
nTPM: 17.8
2587 Male, age 74, left hemisphere 20.0
2668 Female, age 75, unknown 19.5
2664 Male, age 75, both hemispheres 19.3
1796 Male, age 53, unknown 18.9
2261 Male, age 18, unknown 18.8
1839 Male, age 51, unknown 17.2
1913 Female, age 42, unknown 17.2
2087 Female, age 72, unknown 16.5
1995 Male, age 72, unknown 16.1
1895 Male, age 76, right hemisphere 14.6
Ventral tegmental area
nTPM: 17.8
1915 Female, age 42, unknown 20.5
2410 Female, age 72, unknown 20.2
2223 Female, age 72, unknown 18.3
1942 Male, age 51, unknown 17.7
2021 Male, age 53, unknown 15.2
2218 Male, age 76, both hemispheres 14.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 76.9
Min nTPM: 13.5
Std nTPM: 10.2
Median nTPM: 32.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 76.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 76.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 62.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 53.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 53.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 52.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 51.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 50.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 50.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 50.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 18.6
Min nTPM: 11.7
Sample A Female 18.6
Sample B Female 15.2
Sample C Male 11.7
Sample D Male 13.1
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 22.4
Min nTPM: 9.4
Sample A Female 22.4
Sample B Female 14.3
Sample C Male 11.6
Sample D Male 9.4
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 12.8
Min nTPM: 9.6
Sample B Female 12.8
Sample C Male 10.8
Sample D Male 9.6
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 10.5
Sample A Female 17.0
Sample B Female 18.8
Sample C Male 11.3
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 43.4
Min nTPM: 31.4
Sample A Male 43.4
Sample B Male 36.4
Sample C Female 31.4
Sample D Female 41.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68444696 Antisense, RP_050111_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0
70918808 Antisense, RP_050712_04_E09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org