MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.2 nTPM
HPA Brain:67.2 nTPM
GTEx:47.2 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:42.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.8
2586 Male, age 75, left hemisphere 114.4
2666 Male, age 74, left hemisphere 73.0
1827 Male, age 72, unknown 62.8
2019 Male, age 18, unknown 58.5
2828 Female, age 72, unknown 56.5
1833 Male, age 53, unknown 52.0
2411 Female, age 72, unknown 51.1
1830 Male, age 51, unknown 48.5
1870 Female, age 42, unknown 47.7
2219 Male, age 76, both hemispheres 43.5
Dorsal raphe nucleus
nTPM: 54.9
2016 Female, age 72, unknown 65.7
2047 Male, age 72, unknown 58.4
1828 Male, age 53, unknown 57.3
2298 Female, age 72, unknown 49.9
2750 Male, age 76, both hemispheres 42.9
Inferior colliculus
nTPM: 49.6
1890 Male, age 53, unknown 54.2
2849 Male, age 72, unknown 52.2
2097 Female, age 72, unknown 48.7
1848 Female, age 42, unknown 43.4
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 62.8
2502 Female, age 75, unknown 66.5
1795 Male, age 51, unknown 63.4
1947 Male, age 18, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 55.7
2850 Male, age 76, both hemispheres 66.7
2464 Female, age 72, unknown 56.3
1831 Male, age 72, unknown 49.8
1840 Male, age 53, unknown 49.8
Periaquaductal grey, lateral
nTPM: 56.0
2053 Male, age 18, unknown 59.9
2140 Male, age 76, both hemispheres 56.5
2272 Male, age 74, both hemispheres 51.7
Pretectal area
nTPM: 61.6
2407 Male, age 75, both hemispheres 80.6
2007 Male, age 72, unknown 72.7
1816 Male, age 51, unknown 71.1
2667 Female, age 75, unknown 68.6
1944 Female, age 72, unknown 66.8
1817 Female, age 42, unknown 62.0
2273 Male, age 74, both hemispheres 58.8
1815 Male, age 53, unknown 57.4
2825 Male, age 18, unknown 53.1
2316 Male, age 76, right hemisphere 44.9
2224 Female, age 72, unknown 41.3
Red nucleus
nTPM: 57.5
2588 Male, age 74, left hemisphere 73.2
2584 Male, age 75, left hemisphere 63.3
2785 Male, age 18, unknown 59.9
2725 Female, age 75, unknown 59.1
1821 Female, age 72, unknown 58.9
1865 Male, age 51, unknown 58.2
1954 Female, age 42, unknown 56.0
2227 Male, age 72, unknown 55.3
2503 Female, age 72, unknown 53.5
1904 Male, age 53, unknown 53.3
2769 Male, age 72, unknown 52.2
2823 Male, age 76, right hemisphere 46.7
Substantia nigra
nTPM: 67.2
2409 Female, age 72, unknown 78.7
1851 Male, age 51, unknown 74.9
1941 Male, age 53, unknown 73.7
2583 Male, age 75, right hemisphere 72.9
1916 Female, age 42, unknown 72.6
2699 Male, age 18, unknown 66.3
2665 Male, age 74, both hemispheres 66.2
2241 Male, age 72, unknown 61.5
1889 Female, age 72, unknown 54.6
2590 Female, age 75, unknown 50.3
Superior colliculus
nTPM: 58.3
2664 Male, age 75, both hemispheres 107.7
1796 Male, age 53, unknown 63.3
2261 Male, age 18, unknown 61.6
2668 Female, age 75, unknown 59.8
1995 Male, age 72, unknown 52.1
2087 Female, age 72, unknown 51.9
1839 Male, age 51, unknown 49.1
1913 Female, age 42, unknown 48.5
1895 Male, age 76, right hemisphere 45.5
2587 Male, age 74, left hemisphere 43.3
Ventral tegmental area
nTPM: 55.8
1915 Female, age 42, unknown 59.1
1942 Male, age 51, unknown 56.3
2410 Female, age 72, unknown 55.4
2223 Female, age 72, unknown 54.8
2021 Male, age 53, unknown 54.5
2218 Male, age 76, both hemispheres 54.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.2
Samples: 139

Max nTPM: 87.2
Min nTPM: 23.6
Std nTPM: 10.9
Median nTPM: 46.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 87.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 83.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 75.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 65.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 64.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 62.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 60.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.4
Samples: 4

Max nTPM: 68.5
Min nTPM: 45.8
Sample A Female 68.5
Sample B Female 45.8
Sample C Male 64.7
Sample D Male 46.4
Midbrain
nTPM: 58.5
Samples: 4

Max nTPM: 72.7
Min nTPM: 49.1
Sample A Female 62.8
Sample B Female 49.1
Sample C Male 72.7
Sample D Male 49.2
Periaqueductal gray
nTPM: 37.7
Samples: 3

Max nTPM: 41.2
Min nTPM: 31.9
Sample B Female 40.0
Sample C Male 41.2
Sample D Male 31.9
Superior colliculi
nTPM: 61.5
Samples: 4

Max nTPM: 74.0
Min nTPM: 44.9
Sample A Female 71.4
Sample B Female 44.9
Sample C Male 74.0
Sample D Male 55.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.2
Samples: 4

Max nTPM: 43.4
Min nTPM: 41.1
Sample A Male 43.4
Sample B Male 41.1
Sample C Female 42.0
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
75198190 Antisense, RP_060502_02_B06, Mouse strain C57BL/6J (56 days, male) 0.6

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