MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.6 nTPM
HPA Brain:17.6 nTPM
GTEx:2.6 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:2.5 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.5
2666 Male, age 74, left hemisphere 18.5
2828 Female, age 72, unknown 13.2
1827 Male, age 72, unknown 12.2
2586 Male, age 75, left hemisphere 12.1
1830 Male, age 51, unknown 11.5
1833 Male, age 53, unknown 10.8
2411 Female, age 72, unknown 9.7
2219 Male, age 76, both hemispheres 9.4
1870 Female, age 42, unknown 8.7
2019 Male, age 18, unknown 8.6
Dorsal raphe nucleus
nTPM: 11.7
2047 Male, age 72, unknown 15.1
2750 Male, age 76, both hemispheres 12.8
2298 Female, age 72, unknown 10.9
1828 Male, age 53, unknown 10.5
2016 Female, age 72, unknown 9.2
Inferior colliculus
nTPM: 11.4
1890 Male, age 53, unknown 13.2
2849 Male, age 72, unknown 12.3
1848 Female, age 42, unknown 10.4
2097 Female, age 72, unknown 9.8
Median raphe nucleus
nTPM: 13.9
2220 Male, age 76, midline 13.9
Periaquaductal grey, anterior
nTPM: 17.6
1947 Male, age 18, unknown 27.4
1795 Male, age 51, unknown 15.0
2502 Female, age 75, unknown 10.3
Periaquaductal grey, dorsal
nTPM: 11.9
2850 Male, age 76, both hemispheres 14.4
1831 Male, age 72, unknown 12.1
2464 Female, age 72, unknown 10.7
1840 Male, age 53, unknown 10.6
Periaquaductal grey, lateral
nTPM: 10.8
2140 Male, age 76, both hemispheres 13.0
2272 Male, age 74, both hemispheres 10.2
2053 Male, age 18, unknown 9.2
Pretectal area
nTPM: 10.7
1816 Male, age 51, unknown 12.7
2825 Male, age 18, unknown 12.7
1944 Female, age 72, unknown 12.0
2316 Male, age 76, right hemisphere 11.7
2007 Male, age 72, unknown 11.1
2224 Female, age 72, unknown 10.9
1817 Female, age 42, unknown 9.9
1815 Male, age 53, unknown 9.7
2667 Female, age 75, unknown 9.5
2407 Male, age 75, both hemispheres 9.2
2273 Male, age 74, both hemispheres 7.8
Red nucleus
nTPM: 11.6
2584 Male, age 75, left hemisphere 16.3
2588 Male, age 74, left hemisphere 14.6
2725 Female, age 75, unknown 13.6
2823 Male, age 76, right hemisphere 13.2
1904 Male, age 53, unknown 11.6
1865 Male, age 51, unknown 10.7
2769 Male, age 72, unknown 10.7
1954 Female, age 42, unknown 10.5
2227 Male, age 72, unknown 10.0
1821 Female, age 72, unknown 9.6
2785 Male, age 18, unknown 9.5
2503 Female, age 72, unknown 8.7
Substantia nigra
nTPM: 11.9
2665 Male, age 74, both hemispheres 15.4
1941 Male, age 53, unknown 13.3
2590 Female, age 75, unknown 12.7
2583 Male, age 75, right hemisphere 12.4
2241 Male, age 72, unknown 11.5
1851 Male, age 51, unknown 11.4
1889 Female, age 72, unknown 11.2
2409 Female, age 72, unknown 11.2
1916 Female, age 42, unknown 11.0
2699 Male, age 18, unknown 9.1
Superior colliculus
nTPM: 11.0
2668 Female, age 75, unknown 14.8
2087 Female, age 72, unknown 12.4
1895 Male, age 76, right hemisphere 12.2
2261 Male, age 18, unknown 12.2
1796 Male, age 53, unknown 10.6
2587 Male, age 74, left hemisphere 10.4
2664 Male, age 75, both hemispheres 10.3
1839 Male, age 51, unknown 10.1
1913 Female, age 42, unknown 8.7
1995 Male, age 72, unknown 8.1
Ventral tegmental area
nTPM: 12.7
2223 Female, age 72, unknown 13.6
2021 Male, age 53, unknown 13.4
1942 Male, age 51, unknown 13.2
2218 Male, age 76, both hemispheres 13.2
1915 Female, age 42, unknown 12.7
2410 Female, age 72, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.6
Samples: 139

Max nTPM: 18.4
Min nTPM: 0.7
Std nTPM: 1.8
Median nTPM: 2.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 18.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 8.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 8.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 6.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 6.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 5.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 5.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 5.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 4.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 4.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 4.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.0
FF:10158-103A5 76 years, female 10.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 44.2
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 44.2
Sample C Male 13.7
Sample D Male 16.0
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 19.1
Min nTPM: 9.2
Sample A Female 19.1
Sample B Female 11.8
Sample C Male 14.4
Sample D Male 9.2
Periaqueductal gray
nTPM: 12.4
Samples: 3

Max nTPM: 13.1
Min nTPM: 11.8
Sample B Female 12.4
Sample C Male 13.1
Sample D Male 11.8
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 13.6
Sample A Female 19.8
Sample B Female 50.7
Sample C Male 13.6
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.6
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 2.6
Sample C Female 2.6
Sample D Female 2.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69887481 Antisense, RP_050512_03_G09, Mouse strain C57BL/6J (56 days, male) 0.8
77332748 Antisense, RP_070116_02_C03, Mouse strain C57BL/6J (56 days, male) 0.1

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