MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.1 nTPM
HPA Brain:7.8 nTPM
GTEx:1.1 nTPM
FANTOM5:2.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.4
2219 Male, age 76, both hemispheres 5.5
1870 Female, age 42, unknown 4.9
1833 Male, age 53, unknown 4.5
2411 Female, age 72, unknown 3.8
1830 Male, age 51, unknown 3.7
2019 Male, age 18, unknown 3.4
1827 Male, age 72, unknown 2.7
2666 Male, age 74, left hemisphere 2.5
2586 Male, age 75, left hemisphere 2.2
2828 Female, age 72, unknown 1.4
Dorsal raphe nucleus
nTPM: 5.1
2047 Male, age 72, unknown 6.0
2750 Male, age 76, both hemispheres 5.6
2298 Female, age 72, unknown 5.3
2016 Female, age 72, unknown 4.4
1828 Male, age 53, unknown 4.3
Inferior colliculus
nTPM: 5.2
2097 Female, age 72, unknown 7.0
1890 Male, age 53, unknown 6.1
2849 Male, age 72, unknown 4.4
1848 Female, age 42, unknown 3.1
Median raphe nucleus
nTPM: 6.3
2220 Male, age 76, midline 6.3
Periaquaductal grey, anterior
nTPM: 2.9
1947 Male, age 18, unknown 3.5
1795 Male, age 51, unknown 3.2
2502 Female, age 75, unknown 2.0
Periaquaductal grey, dorsal
nTPM: 5.3
2850 Male, age 76, both hemispheres 8.3
1840 Male, age 53, unknown 5.1
2464 Female, age 72, unknown 4.2
1831 Male, age 72, unknown 3.5
Periaquaductal grey, lateral
nTPM: 5.5
2140 Male, age 76, both hemispheres 6.6
2272 Male, age 74, both hemispheres 6.3
2053 Male, age 18, unknown 3.8
Pretectal area
nTPM: 5.1
2667 Female, age 75, unknown 12.8
1944 Female, age 72, unknown 8.0
2224 Female, age 72, unknown 5.9
2825 Male, age 18, unknown 5.6
2273 Male, age 74, both hemispheres 4.9
2007 Male, age 72, unknown 4.4
2407 Male, age 75, both hemispheres 3.7
1815 Male, age 53, unknown 3.6
1817 Female, age 42, unknown 3.6
1816 Male, age 51, unknown 2.1
2316 Male, age 76, right hemisphere 1.7
Red nucleus
nTPM: 5.3
1821 Female, age 72, unknown 7.8
1904 Male, age 53, unknown 7.5
2227 Male, age 72, unknown 7.0
1954 Female, age 42, unknown 6.9
2769 Male, age 72, unknown 6.4
2823 Male, age 76, right hemisphere 6.4
1865 Male, age 51, unknown 5.2
2503 Female, age 72, unknown 4.7
2584 Male, age 75, left hemisphere 4.0
2588 Male, age 74, left hemisphere 2.7
2785 Male, age 18, unknown 2.4
2725 Female, age 75, unknown 1.8
Substantia nigra
nTPM: 7.8
2699 Male, age 18, unknown 14.7
1916 Female, age 42, unknown 11.8
2241 Male, age 72, unknown 9.6
1851 Male, age 51, unknown 9.4
1889 Female, age 72, unknown 9.3
2409 Female, age 72, unknown 7.8
1941 Male, age 53, unknown 5.0
2590 Female, age 75, unknown 4.1
2665 Male, age 74, both hemispheres 3.8
2583 Male, age 75, right hemisphere 2.5
Superior colliculus
nTPM: 3.3
2668 Female, age 75, unknown 5.9
1913 Female, age 42, unknown 4.6
1839 Male, age 51, unknown 4.0
2087 Female, age 72, unknown 3.7
1895 Male, age 76, right hemisphere 3.3
2664 Male, age 75, both hemispheres 2.8
1796 Male, age 53, unknown 2.6
2261 Male, age 18, unknown 2.3
1995 Male, age 72, unknown 1.7
2587 Male, age 74, left hemisphere 1.7
Ventral tegmental area
nTPM: 5.4
2218 Male, age 76, both hemispheres 6.9
1915 Female, age 42, unknown 6.8
2410 Female, age 72, unknown 5.7
2021 Male, age 53, unknown 4.9
1942 Male, age 51, unknown 4.5
2223 Female, age 72, unknown 3.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.1
Samples: 139

Max nTPM: 7.8
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 0.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 5.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 4.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 4.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 2.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

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