MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.8 nTPM
HPA Brain:129.1 nTPM
GTEx:76.8 nTPM
FANTOM5:142.8 Scaled Tags Per Million
Pig:447.0 nTPM
Mouse:62.1 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.1
1833 Male, age 53, unknown 134.9
1830 Male, age 51, unknown 118.7
2411 Female, age 72, unknown 110.4
2219 Male, age 76, both hemispheres 106.1
2828 Female, age 72, unknown 86.8
2586 Male, age 75, left hemisphere 86.2
1870 Female, age 42, unknown 80.8
2019 Male, age 18, unknown 78.1
1827 Male, age 72, unknown 73.8
2666 Male, age 74, left hemisphere 65.8
Dorsal raphe nucleus
nTPM: 63.0
2750 Male, age 76, both hemispheres 97.1
2016 Female, age 72, unknown 86.7
1828 Male, age 53, unknown 57.4
2298 Female, age 72, unknown 40.2
2047 Male, age 72, unknown 33.8
Inferior colliculus
nTPM: 60.0
2849 Male, age 72, unknown 82.4
1848 Female, age 42, unknown 58.5
2097 Female, age 72, unknown 51.7
1890 Male, age 53, unknown 47.5
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Periaquaductal grey, anterior
nTPM: 73.4
2502 Female, age 75, unknown 104.5
1947 Male, age 18, unknown 71.6
1795 Male, age 51, unknown 44.1
Periaquaductal grey, dorsal
nTPM: 50.9
2464 Female, age 72, unknown 91.2
1840 Male, age 53, unknown 39.4
1831 Male, age 72, unknown 37.9
2850 Male, age 76, both hemispheres 35.0
Periaquaductal grey, lateral
nTPM: 56.4
2272 Male, age 74, both hemispheres 70.0
2053 Male, age 18, unknown 62.3
2140 Male, age 76, both hemispheres 37.0
Pretectal area
nTPM: 61.7
2316 Male, age 76, right hemisphere 122.6
1815 Male, age 53, unknown 95.0
2407 Male, age 75, both hemispheres 74.4
2825 Male, age 18, unknown 73.6
1817 Female, age 42, unknown 67.7
2224 Female, age 72, unknown 52.4
2007 Male, age 72, unknown 52.2
2273 Male, age 74, both hemispheres 47.2
1816 Male, age 51, unknown 39.0
2667 Female, age 75, unknown 32.3
1944 Female, age 72, unknown 22.4
Red nucleus
nTPM: 129.1
1904 Male, age 53, unknown 180.8
1865 Male, age 51, unknown 153.6
2503 Female, age 72, unknown 150.8
1821 Female, age 72, unknown 150.7
2823 Male, age 76, right hemisphere 137.8
2769 Male, age 72, unknown 127.1
2227 Male, age 72, unknown 126.6
2588 Male, age 74, left hemisphere 118.9
1954 Female, age 42, unknown 115.4
2785 Male, age 18, unknown 111.4
2584 Male, age 75, left hemisphere 92.7
2725 Female, age 75, unknown 83.3
Substantia nigra
nTPM: 67.5
2409 Female, age 72, unknown 111.7
2590 Female, age 75, unknown 96.0
1851 Male, age 51, unknown 79.0
2699 Male, age 18, unknown 77.4
2241 Male, age 72, unknown 74.8
1889 Female, age 72, unknown 54.0
2583 Male, age 75, right hemisphere 53.8
2665 Male, age 74, both hemispheres 50.7
1941 Male, age 53, unknown 40.2
1916 Female, age 42, unknown 36.9
Superior colliculus
nTPM: 86.3
1895 Male, age 76, right hemisphere 165.3
1995 Male, age 72, unknown 133.2
1839 Male, age 51, unknown 92.5
2668 Female, age 75, unknown 90.4
2587 Male, age 74, left hemisphere 85.2
1913 Female, age 42, unknown 74.8
1796 Male, age 53, unknown 68.4
2664 Male, age 75, both hemispheres 64.4
2261 Male, age 18, unknown 55.7
2087 Female, age 72, unknown 33.3
Ventral tegmental area
nTPM: 59.8
2410 Female, age 72, unknown 97.6
1915 Female, age 42, unknown 65.9
1942 Male, age 51, unknown 56.1
2223 Female, age 72, unknown 49.1
2218 Male, age 76, both hemispheres 46.9
2021 Male, age 53, unknown 43.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.8
Samples: 139

Max nTPM: 323.9
Min nTPM: 9.0
Std nTPM: 52.3
Median nTPM: 59.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 323.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 276.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 241.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 225.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 215.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 186.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 182.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 157.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 155.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 153.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 149.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.8
FF:10158-103A5 76 years, female 142.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 447.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 447.0
Samples: 4

Max nTPM: 657.2
Min nTPM: 318.4
Sample A Female 452.1
Sample B Female 318.4
Sample C Male 360.3
Sample D Male 657.2
Midbrain
nTPM: 361.2
Samples: 4

Max nTPM: 599.8
Min nTPM: 234.5
Sample A Female 330.1
Sample B Female 599.8
Sample C Male 234.5
Sample D Male 280.2
Periaqueductal gray
nTPM: 365.6
Samples: 3

Max nTPM: 469.0
Min nTPM: 280.6
Sample B Female 469.0
Sample C Male 280.6
Sample D Male 347.3
Superior colliculi
nTPM: 326.8
Samples: 4

Max nTPM: 423.7
Min nTPM: 152.7
Sample A Female 370.8
Sample B Female 152.7
Sample C Male 360.0
Sample D Male 423.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 67.7
Min nTPM: 59.4
Sample A Male 67.7
Sample B Male 59.8
Sample C Female 59.4
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
69116504 Antisense, RP_050317_02_G03, Mouse strain C57BL/6J (56 days, male) 3.8

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