MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:122.3 nTPM
GTEx:16.0 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:84.6 nTPM
Mouse:100.2 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.6
2019 Male, age 18, unknown 134.3
1827 Male, age 72, unknown 125.4
2219 Male, age 76, both hemispheres 121.6
2666 Male, age 74, left hemisphere 101.2
2828 Female, age 72, unknown 100.2
2411 Female, age 72, unknown 96.8
1833 Male, age 53, unknown 93.8
1830 Male, age 51, unknown 93.5
2586 Male, age 75, left hemisphere 87.8
1870 Female, age 42, unknown 81.3
Dorsal raphe nucleus
nTPM: 85.2
2750 Male, age 76, both hemispheres 90.6
1828 Male, age 53, unknown 89.5
2047 Male, age 72, unknown 88.8
2298 Female, age 72, unknown 79.6
2016 Female, age 72, unknown 77.6
Inferior colliculus
nTPM: 102.9
2097 Female, age 72, unknown 115.7
1890 Male, age 53, unknown 111.2
1848 Female, age 42, unknown 93.9
2849 Male, age 72, unknown 90.8
Median raphe nucleus
nTPM: 89.2
2220 Male, age 76, midline 89.2
Periaquaductal grey, anterior
nTPM: 102.1
1947 Male, age 18, unknown 105.0
1795 Male, age 51, unknown 101.8
2502 Female, age 75, unknown 99.6
Periaquaductal grey, dorsal
nTPM: 84.3
1831 Male, age 72, unknown 90.8
2464 Female, age 72, unknown 89.7
1840 Male, age 53, unknown 80.0
2850 Male, age 76, both hemispheres 76.8
Periaquaductal grey, lateral
nTPM: 83.2
2272 Male, age 74, both hemispheres 90.5
2053 Male, age 18, unknown 85.2
2140 Male, age 76, both hemispheres 73.9
Pretectal area
nTPM: 121.2
2007 Male, age 72, unknown 165.1
1816 Male, age 51, unknown 164.8
1944 Female, age 72, unknown 156.4
1817 Female, age 42, unknown 146.7
1815 Male, age 53, unknown 133.7
2407 Male, age 75, both hemispheres 119.8
2667 Female, age 75, unknown 104.5
2224 Female, age 72, unknown 91.1
2316 Male, age 76, right hemisphere 87.7
2273 Male, age 74, both hemispheres 81.9
2825 Male, age 18, unknown 81.5
Red nucleus
nTPM: 99.4
2785 Male, age 18, unknown 125.8
2588 Male, age 74, left hemisphere 119.0
2584 Male, age 75, left hemisphere 115.2
2503 Female, age 72, unknown 101.6
1821 Female, age 72, unknown 98.3
2823 Male, age 76, right hemisphere 97.7
1865 Male, age 51, unknown 97.2
2725 Female, age 75, unknown 92.6
1954 Female, age 42, unknown 91.5
1904 Male, age 53, unknown 91.0
2227 Male, age 72, unknown 81.8
2769 Male, age 72, unknown 80.9
Substantia nigra
nTPM: 122.3
1916 Female, age 42, unknown 154.1
1941 Male, age 53, unknown 139.1
2409 Female, age 72, unknown 129.7
1889 Female, age 72, unknown 129.4
2241 Male, age 72, unknown 126.4
1851 Male, age 51, unknown 117.7
2583 Male, age 75, right hemisphere 112.9
2590 Female, age 75, unknown 112.7
2665 Male, age 74, both hemispheres 107.0
2699 Male, age 18, unknown 93.6
Superior colliculus
nTPM: 110.0
2668 Female, age 75, unknown 142.9
2087 Female, age 72, unknown 133.8
1895 Male, age 76, right hemisphere 117.8
2261 Male, age 18, unknown 113.9
1796 Male, age 53, unknown 111.3
1913 Female, age 42, unknown 101.7
2664 Male, age 75, both hemispheres 98.7
2587 Male, age 74, left hemisphere 97.9
1839 Male, age 51, unknown 93.5
1995 Male, age 72, unknown 88.3
Ventral tegmental area
nTPM: 104.8
2410 Female, age 72, unknown 128.9
2218 Male, age 76, both hemispheres 116.5
1915 Female, age 42, unknown 109.4
1942 Male, age 51, unknown 97.9
2223 Female, age 72, unknown 92.3
2021 Male, age 53, unknown 83.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 52.7
Min nTPM: 4.4
Std nTPM: 9.0
Median nTPM: 13.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 36.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 34.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 30.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 30.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 29.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.0
FF:10158-103A5 76 years, female 36.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.3
Samples: 4

Max nTPM: 79.5
Min nTPM: 22.5
Sample A Female 70.8
Sample B Female 40.2
Sample C Male 79.5
Sample D Male 22.5
Midbrain
nTPM: 75.8
Samples: 4

Max nTPM: 154.1
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 48.0
Sample C Male 154.1
Sample D Male 78.4
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 52.1
Min nTPM: 33.5
Sample B Female 39.0
Sample C Male 52.1
Sample D Male 33.5
Superior colliculi
nTPM: 84.6
Samples: 4

Max nTPM: 143.6
Min nTPM: 49.3
Sample A Female 67.6
Sample B Female 49.3
Sample C Male 143.6
Sample D Male 77.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 100.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.2
Samples: 4

Max nTPM: 109.2
Min nTPM: 84.3
Sample A Male 84.3
Sample B Male 109.2
Sample C Female 103.6
Sample D Female 103.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
70918838 Antisense, RP_050712_04_F03, Mouse strain C57BL/6J (56 days, male) 9.9
69782013 Antisense, RP_050505_02_B04, Mouse strain C57BL/6J (56 days, male) 7.8

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