MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.8 nTPM
HPA Brain:14.9 nTPM
GTEx:2.8 nTPM
FANTOM5:6.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.9
2666 Male, age 74, left hemisphere 17.1
1827 Male, age 72, unknown 14.4
2219 Male, age 76, both hemispheres 13.8
2586 Male, age 75, left hemisphere 12.3
2828 Female, age 72, unknown 12.3
1830 Male, age 51, unknown 12.2
2411 Female, age 72, unknown 12.1
1833 Male, age 53, unknown 11.9
2019 Male, age 18, unknown 11.6
1870 Female, age 42, unknown 11.3
Dorsal raphe nucleus
nTPM: 14.2
2047 Male, age 72, unknown 17.6
2016 Female, age 72, unknown 14.1
1828 Male, age 53, unknown 13.8
2298 Female, age 72, unknown 13.6
2750 Male, age 76, both hemispheres 12.2
Inferior colliculus
nTPM: 13.4
1890 Male, age 53, unknown 14.6
1848 Female, age 42, unknown 13.9
2849 Male, age 72, unknown 12.9
2097 Female, age 72, unknown 12.1
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Periaquaductal grey, anterior
nTPM: 11.9
1947 Male, age 18, unknown 12.5
2502 Female, age 75, unknown 11.7
1795 Male, age 51, unknown 11.6
Periaquaductal grey, dorsal
nTPM: 14.9
1840 Male, age 53, unknown 16.7
2464 Female, age 72, unknown 15.2
1831 Male, age 72, unknown 15.0
2850 Male, age 76, both hemispheres 12.7
Periaquaductal grey, lateral
nTPM: 13.4
2140 Male, age 76, both hemispheres 15.1
2272 Male, age 74, both hemispheres 13.0
2053 Male, age 18, unknown 12.3
Pretectal area
nTPM: 14.3
2407 Male, age 75, both hemispheres 17.4
1944 Female, age 72, unknown 14.9
2224 Female, age 72, unknown 14.9
1816 Male, age 51, unknown 14.5
2667 Female, age 75, unknown 14.1
2825 Male, age 18, unknown 14.0
1815 Male, age 53, unknown 13.9
2007 Male, age 72, unknown 13.8
1817 Female, age 42, unknown 13.2
2316 Male, age 76, right hemisphere 13.2
2273 Male, age 74, both hemispheres 13.1
Red nucleus
nTPM: 12.4
2584 Male, age 75, left hemisphere 14.6
2725 Female, age 75, unknown 13.9
1865 Male, age 51, unknown 13.4
1904 Male, age 53, unknown 13.3
2503 Female, age 72, unknown 13.2
2823 Male, age 76, right hemisphere 12.9
1821 Female, age 72, unknown 11.9
1954 Female, age 42, unknown 11.6
2769 Male, age 72, unknown 11.6
2785 Male, age 18, unknown 11.4
2227 Male, age 72, unknown 10.6
2588 Male, age 74, left hemisphere 10.3
Substantia nigra
nTPM: 14.7
1916 Female, age 42, unknown 16.5
2241 Male, age 72, unknown 16.5
2583 Male, age 75, right hemisphere 16.5
2665 Male, age 74, both hemispheres 16.0
2699 Male, age 18, unknown 15.5
1851 Male, age 51, unknown 14.2
2590 Female, age 75, unknown 14.1
1889 Female, age 72, unknown 14.0
1941 Male, age 53, unknown 12.3
2409 Female, age 72, unknown 11.5
Superior colliculus
nTPM: 12.2
2087 Female, age 72, unknown 14.7
2261 Male, age 18, unknown 14.4
1895 Male, age 76, right hemisphere 13.0
1796 Male, age 53, unknown 12.5
1839 Male, age 51, unknown 12.2
2587 Male, age 74, left hemisphere 11.9
2668 Female, age 75, unknown 11.6
1913 Female, age 42, unknown 11.3
2664 Male, age 75, both hemispheres 10.7
1995 Male, age 72, unknown 10.0
Ventral tegmental area
nTPM: 13.8
2410 Female, age 72, unknown 17.0
1915 Female, age 42, unknown 15.3
2218 Male, age 76, both hemispheres 14.1
1942 Male, age 51, unknown 13.7
2021 Male, age 53, unknown 13.3
2223 Female, age 72, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.8
Samples: 139

Max nTPM: 10.8
Min nTPM: 1.0
Std nTPM: 1.2
Median nTPM: 2.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 5.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 5.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 5.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 4.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 4.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 4.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

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