MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:105.2 nTPM
GTEx:21.1 nTPM
FANTOM5:158.3 Scaled Tags Per Million
Pig:52.7 nTPM
Mouse:20.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.5
1830 Male, age 51, unknown 107.0
1833 Male, age 53, unknown 98.4
2586 Male, age 75, left hemisphere 92.3
2411 Female, age 72, unknown 89.0
2019 Male, age 18, unknown 88.9
2828 Female, age 72, unknown 87.2
1870 Female, age 42, unknown 86.3
2666 Male, age 74, left hemisphere 65.7
2219 Male, age 76, both hemispheres 60.3
1827 Male, age 72, unknown 59.6
Dorsal raphe nucleus
nTPM: 61.9
2750 Male, age 76, both hemispheres 86.9
2016 Female, age 72, unknown 73.7
1828 Male, age 53, unknown 63.6
2047 Male, age 72, unknown 44.5
2298 Female, age 72, unknown 41.0
Inferior colliculus
nTPM: 57.6
2849 Male, age 72, unknown 64.3
1890 Male, age 53, unknown 63.6
1848 Female, age 42, unknown 57.9
2097 Female, age 72, unknown 44.4
Median raphe nucleus
nTPM: 60.8
2220 Male, age 76, midline 60.8
Periaquaductal grey, anterior
nTPM: 57.6
2502 Female, age 75, unknown 70.1
1947 Male, age 18, unknown 54.7
1795 Male, age 51, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 46.3
2464 Female, age 72, unknown 65.3
1831 Male, age 72, unknown 47.4
2850 Male, age 76, both hemispheres 41.6
1840 Male, age 53, unknown 30.8
Periaquaductal grey, lateral
nTPM: 53.2
2272 Male, age 74, both hemispheres 62.8
2053 Male, age 18, unknown 56.0
2140 Male, age 76, both hemispheres 40.8
Pretectal area
nTPM: 52.6
2407 Male, age 75, both hemispheres 69.5
2316 Male, age 76, right hemisphere 65.5
1815 Male, age 53, unknown 65.4
2825 Male, age 18, unknown 58.1
2007 Male, age 72, unknown 53.8
2273 Male, age 74, both hemispheres 53.4
1817 Female, age 42, unknown 51.2
2224 Female, age 72, unknown 48.9
2667 Female, age 75, unknown 48.1
1816 Male, age 51, unknown 32.4
1944 Female, age 72, unknown 32.3
Red nucleus
nTPM: 105.2
1865 Male, age 51, unknown 119.7
1904 Male, age 53, unknown 117.3
2227 Male, age 72, unknown 116.4
2769 Male, age 72, unknown 115.9
2503 Female, age 72, unknown 114.2
2823 Male, age 76, right hemisphere 114.2
2785 Male, age 18, unknown 110.3
2588 Male, age 74, left hemisphere 99.2
1821 Female, age 72, unknown 97.3
1954 Female, age 42, unknown 95.9
2584 Male, age 75, left hemisphere 88.2
2725 Female, age 75, unknown 74.0
Substantia nigra
nTPM: 62.3
2583 Male, age 75, right hemisphere 79.3
2590 Female, age 75, unknown 73.4
1851 Male, age 51, unknown 71.3
2409 Female, age 72, unknown 69.6
2699 Male, age 18, unknown 67.9
2665 Male, age 74, both hemispheres 55.7
1889 Female, age 72, unknown 55.1
1941 Male, age 53, unknown 53.4
2241 Male, age 72, unknown 50.5
1916 Female, age 42, unknown 46.4
Superior colliculus
nTPM: 66.8
1913 Female, age 42, unknown 94.9
1995 Male, age 72, unknown 92.2
2587 Male, age 74, left hemisphere 70.5
1839 Male, age 51, unknown 70.4
1895 Male, age 76, right hemisphere 66.9
2668 Female, age 75, unknown 65.8
2664 Male, age 75, both hemispheres 65.3
1796 Male, age 53, unknown 56.0
2261 Male, age 18, unknown 43.6
2087 Female, age 72, unknown 42.4
Ventral tegmental area
nTPM: 70.7
2223 Female, age 72, unknown 91.0
2410 Female, age 72, unknown 77.0
1942 Male, age 51, unknown 68.8
2021 Male, age 53, unknown 65.0
1915 Female, age 42, unknown 62.4
2218 Male, age 76, both hemispheres 60.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 85.0
Min nTPM: 7.7
Std nTPM: 9.6
Median nTPM: 20.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 85.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 41.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 35.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 34.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 34.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 34.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 33.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.3
FF:10158-103A5 76 years, female 158.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.8
Samples: 4

Max nTPM: 77.3
Min nTPM: 40.4
Sample A Female 40.4
Sample B Female 47.8
Sample C Male 45.5
Sample D Male 77.3
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 83.5
Min nTPM: 33.8
Sample A Female 83.5
Sample B Female 51.2
Sample C Male 34.6
Sample D Male 33.8
Periaqueductal gray
nTPM: 41.3
Samples: 3

Max nTPM: 50.0
Min nTPM: 33.5
Sample B Female 50.0
Sample C Male 33.5
Sample D Male 40.5
Superior colliculi
nTPM: 40.1
Samples: 4

Max nTPM: 45.7
Min nTPM: 34.2
Sample A Female 36.5
Sample B Female 34.2
Sample C Male 44.0
Sample D Male 45.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 21.5
Min nTPM: 18.7
Sample A Male 18.7
Sample B Male 20.2
Sample C Female 21.5
Sample D Female 19.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71211419 Antisense, RP_050816_01_E09, Mouse strain C57BL/6J (56 days, male) 1.5
72283647 Antisense, RP_051019_01_H01, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org