MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:20.7 nTPM
GTEx:22.8 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:30.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.8
2219 Male, age 76, both hemispheres 21.6
2019 Male, age 18, unknown 21.5
2586 Male, age 75, left hemisphere 20.8
1827 Male, age 72, unknown 19.2
1833 Male, age 53, unknown 18.3
1830 Male, age 51, unknown 17.8
2411 Female, age 72, unknown 17.5
2666 Male, age 74, left hemisphere 17.4
2828 Female, age 72, unknown 17.3
1870 Female, age 42, unknown 16.1
Dorsal raphe nucleus
nTPM: 17.8
2047 Male, age 72, unknown 19.6
1828 Male, age 53, unknown 18.0
2298 Female, age 72, unknown 17.6
2750 Male, age 76, both hemispheres 17.4
2016 Female, age 72, unknown 16.5
Inferior colliculus
nTPM: 17.4
1890 Male, age 53, unknown 18.4
1848 Female, age 42, unknown 17.8
2097 Female, age 72, unknown 16.8
2849 Male, age 72, unknown 16.7
Median raphe nucleus
nTPM: 19.0
2220 Male, age 76, midline 19.0
Periaquaductal grey, anterior
nTPM: 20.7
2502 Female, age 75, unknown 22.6
1795 Male, age 51, unknown 21.7
1947 Male, age 18, unknown 17.8
Periaquaductal grey, dorsal
nTPM: 16.9
2464 Female, age 72, unknown 20.3
2850 Male, age 76, both hemispheres 16.3
1840 Male, age 53, unknown 15.8
1831 Male, age 72, unknown 15.1
Periaquaductal grey, lateral
nTPM: 18.0
2272 Male, age 74, both hemispheres 19.5
2140 Male, age 76, both hemispheres 17.5
2053 Male, age 18, unknown 17.1
Pretectal area
nTPM: 19.2
1816 Male, age 51, unknown 21.8
2316 Male, age 76, right hemisphere 21.2
1817 Female, age 42, unknown 20.8
2007 Male, age 72, unknown 20.8
2667 Female, age 75, unknown 19.6
2407 Male, age 75, both hemispheres 19.0
2273 Male, age 74, both hemispheres 18.6
2224 Female, age 72, unknown 18.2
2825 Male, age 18, unknown 17.7
1944 Female, age 72, unknown 17.5
1815 Male, age 53, unknown 16.3
Red nucleus
nTPM: 18.1
2785 Male, age 18, unknown 21.0
2584 Male, age 75, left hemisphere 20.6
2588 Male, age 74, left hemisphere 20.4
2227 Male, age 72, unknown 20.0
2769 Male, age 72, unknown 18.8
2823 Male, age 76, right hemisphere 18.4
2725 Female, age 75, unknown 17.7
2503 Female, age 72, unknown 17.3
1904 Male, age 53, unknown 16.9
1954 Female, age 42, unknown 16.8
1821 Female, age 72, unknown 14.7
1865 Male, age 51, unknown 14.5
Substantia nigra
nTPM: 18.7
1916 Female, age 42, unknown 23.1
1941 Male, age 53, unknown 21.8
2241 Male, age 72, unknown 19.6
1851 Male, age 51, unknown 18.6
2665 Male, age 74, both hemispheres 18.6
2699 Male, age 18, unknown 18.2
2590 Female, age 75, unknown 18.1
2409 Female, age 72, unknown 16.9
2583 Male, age 75, right hemisphere 16.7
1889 Female, age 72, unknown 15.7
Superior colliculus
nTPM: 17.7
2664 Male, age 75, both hemispheres 22.3
1796 Male, age 53, unknown 19.3
2087 Female, age 72, unknown 18.5
2587 Male, age 74, left hemisphere 18.3
1839 Male, age 51, unknown 17.7
1895 Male, age 76, right hemisphere 17.7
2261 Male, age 18, unknown 17.6
2668 Female, age 75, unknown 16.4
1913 Female, age 42, unknown 16.3
1995 Male, age 72, unknown 13.5
Ventral tegmental area
nTPM: 17.8
1915 Female, age 42, unknown 19.6
1942 Male, age 51, unknown 19.3
2021 Male, age 53, unknown 17.5
2218 Male, age 76, both hemispheres 17.1
2223 Female, age 72, unknown 17.1
2410 Female, age 72, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 51.2
Min nTPM: 9.9
Std nTPM: 5.6
Median nTPM: 23.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 31.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 30.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 30.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 30.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 30.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 29.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 29.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 29.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.2
FF:10158-103A5 76 years, female 60.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 35.7
Min nTPM: 24.1
Sample A Female 35.7
Sample B Female 24.1
Sample C Male 28.8
Sample D Male 29.0
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 45.0
Min nTPM: 28.4
Sample A Female 45.0
Sample B Female 28.4
Sample C Male 37.7
Sample D Male 31.7
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 25.8
Min nTPM: 20.7
Sample B Female 22.9
Sample C Male 25.8
Sample D Male 20.7
Superior colliculi
nTPM: 37.0
Samples: 4

Max nTPM: 41.4
Min nTPM: 33.0
Sample A Female 41.4
Sample B Female 33.0
Sample C Male 40.3
Sample D Male 33.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.9
Sample A Male 29.4
Sample B Male 27.9
Sample C Female 34.7
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
72002079 Antisense, RP_050915_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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