MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.4 nTPM
HPA Brain:47.1 nTPM
GTEx:25.4 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:27.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.2
2586 Male, age 75, left hemisphere 49.9
2666 Male, age 74, left hemisphere 43.4
2828 Female, age 72, unknown 39.2
1827 Male, age 72, unknown 37.4
1833 Male, age 53, unknown 35.7
2219 Male, age 76, both hemispheres 35.6
2019 Male, age 18, unknown 35.0
1870 Female, age 42, unknown 34.2
2411 Female, age 72, unknown 33.3
1830 Male, age 51, unknown 28.6
Dorsal raphe nucleus
nTPM: 45.0
2298 Female, age 72, unknown 50.4
2047 Male, age 72, unknown 46.6
2016 Female, age 72, unknown 46.1
1828 Male, age 53, unknown 45.8
2750 Male, age 76, both hemispheres 36.3
Inferior colliculus
nTPM: 38.1
1890 Male, age 53, unknown 42.1
2097 Female, age 72, unknown 38.6
1848 Female, age 42, unknown 36.0
2849 Male, age 72, unknown 35.8
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 39.5
1795 Male, age 51, unknown 39.8
2502 Female, age 75, unknown 39.5
1947 Male, age 18, unknown 39.1
Periaquaductal grey, dorsal
nTPM: 43.3
1840 Male, age 53, unknown 49.1
2850 Male, age 76, both hemispheres 48.4
1831 Male, age 72, unknown 38.1
2464 Female, age 72, unknown 37.3
Periaquaductal grey, lateral
nTPM: 39.2
2140 Male, age 76, both hemispheres 41.1
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 37.3
1816 Male, age 51, unknown 45.0
2224 Female, age 72, unknown 41.4
2007 Male, age 72, unknown 41.0
1817 Female, age 42, unknown 40.3
1944 Female, age 72, unknown 38.0
2825 Male, age 18, unknown 37.4
1815 Male, age 53, unknown 37.3
2273 Male, age 74, both hemispheres 35.9
2316 Male, age 76, right hemisphere 32.1
2407 Male, age 75, both hemispheres 31.1
2667 Female, age 75, unknown 30.8
Red nucleus
nTPM: 33.2
2725 Female, age 75, unknown 40.3
1821 Female, age 72, unknown 40.2
2584 Male, age 75, left hemisphere 37.2
2588 Male, age 74, left hemisphere 34.6
2503 Female, age 72, unknown 33.8
1954 Female, age 42, unknown 32.4
2769 Male, age 72, unknown 32.4
1904 Male, age 53, unknown 32.3
2823 Male, age 76, right hemisphere 30.9
2785 Male, age 18, unknown 29.4
2227 Male, age 72, unknown 28.5
1865 Male, age 51, unknown 26.7
Substantia nigra
nTPM: 47.1
2241 Male, age 72, unknown 60.5
2665 Male, age 74, both hemispheres 54.4
1916 Female, age 42, unknown 53.9
1851 Male, age 51, unknown 53.1
2699 Male, age 18, unknown 52.2
2409 Female, age 72, unknown 45.7
2590 Female, age 75, unknown 40.0
1889 Female, age 72, unknown 39.1
2583 Male, age 75, right hemisphere 36.6
1941 Male, age 53, unknown 34.9
Superior colliculus
nTPM: 34.3
2668 Female, age 75, unknown 39.0
2087 Female, age 72, unknown 38.1
2261 Male, age 18, unknown 36.3
1839 Male, age 51, unknown 36.1
2664 Male, age 75, both hemispheres 35.3
1796 Male, age 53, unknown 34.9
2587 Male, age 74, left hemisphere 32.5
1895 Male, age 76, right hemisphere 32.2
1995 Male, age 72, unknown 31.4
1913 Female, age 42, unknown 27.6
Ventral tegmental area
nTPM: 40.2
1915 Female, age 42, unknown 45.2
2410 Female, age 72, unknown 43.5
1942 Male, age 51, unknown 42.5
2021 Male, age 53, unknown 41.6
2218 Male, age 76, both hemispheres 40.9
2223 Female, age 72, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.4
Samples: 139

Max nTPM: 45.9
Min nTPM: 10.8
Std nTPM: 6.4
Median nTPM: 24.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 40.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 39.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 38.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 38.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 36.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 36.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 35.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 34.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 26.7
Sample A Female 33.5
Sample B Female 28.4
Sample C Male 31.1
Sample D Male 26.7
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 31.6
Min nTPM: 25.6
Sample A Female 29.1
Sample B Female 29.6
Sample C Male 31.6
Sample D Male 25.6
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 29.0
Min nTPM: 23.9
Sample B Female 24.1
Sample C Male 29.0
Sample D Male 23.9
Superior colliculi
nTPM: 29.9
Samples: 4

Max nTPM: 37.0
Min nTPM: 25.0
Sample A Female 28.3
Sample B Female 37.0
Sample C Male 29.4
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 24.7
Sample A Male 29.5
Sample B Male 24.7
Sample C Female 28.2
Sample D Female 29.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71020778 Antisense, RP_050505_01_G02, Mouse strain C57BL/6J (56 days, male) 0.2
77332711 Antisense, RP_070116_02_B09, Mouse strain C57BL/6J (56 days, male) 0.2

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