MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:503.1 nTPM
HPA Brain:136.8 nTPM
GTEx:503.1 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:388.1 nTPM
Mouse:728.6 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.7
1870 Female, age 42, unknown 148.7
2666 Male, age 74, left hemisphere 145.7
2411 Female, age 72, unknown 133.3
1833 Male, age 53, unknown 119.8
2219 Male, age 76, both hemispheres 118.0
1827 Male, age 72, unknown 115.1
1830 Male, age 51, unknown 112.3
2828 Female, age 72, unknown 108.3
2019 Male, age 18, unknown 100.8
2586 Male, age 75, left hemisphere 95.3
Dorsal raphe nucleus
nTPM: 121.6
2298 Female, age 72, unknown 134.7
2016 Female, age 72, unknown 132.0
2750 Male, age 76, both hemispheres 129.6
1828 Male, age 53, unknown 107.5
2047 Male, age 72, unknown 104.4
Inferior colliculus
nTPM: 127.5
2849 Male, age 72, unknown 134.3
1848 Female, age 42, unknown 129.4
1890 Male, age 53, unknown 126.8
2097 Female, age 72, unknown 119.4
Median raphe nucleus
nTPM: 130.1
2220 Male, age 76, midline 130.1
Periaquaductal grey, anterior
nTPM: 121.2
2502 Female, age 75, unknown 140.0
1947 Male, age 18, unknown 113.9
1795 Male, age 51, unknown 109.7
Periaquaductal grey, dorsal
nTPM: 126.6
1840 Male, age 53, unknown 151.2
2850 Male, age 76, both hemispheres 127.4
2464 Female, age 72, unknown 115.2
1831 Male, age 72, unknown 112.5
Periaquaductal grey, lateral
nTPM: 120.7
2140 Male, age 76, both hemispheres 129.6
2053 Male, age 18, unknown 124.7
2272 Male, age 74, both hemispheres 107.9
Pretectal area
nTPM: 110.4
2224 Female, age 72, unknown 133.8
2316 Male, age 76, right hemisphere 133.7
2825 Male, age 18, unknown 127.9
1817 Female, age 42, unknown 113.8
1815 Male, age 53, unknown 113.6
2007 Male, age 72, unknown 104.5
2667 Female, age 75, unknown 101.6
1816 Male, age 51, unknown 101.4
1944 Female, age 72, unknown 96.3
2273 Male, age 74, both hemispheres 95.4
2407 Male, age 75, both hemispheres 92.9
Red nucleus
nTPM: 126.9
2503 Female, age 72, unknown 170.8
1821 Female, age 72, unknown 140.5
1865 Male, age 51, unknown 137.0
2227 Male, age 72, unknown 129.5
2725 Female, age 75, unknown 127.7
2769 Male, age 72, unknown 124.0
1904 Male, age 53, unknown 123.1
2588 Male, age 74, left hemisphere 119.9
1954 Female, age 42, unknown 119.4
2823 Male, age 76, right hemisphere 111.5
2584 Male, age 75, left hemisphere 110.0
2785 Male, age 18, unknown 109.5
Substantia nigra
nTPM: 126.8
2241 Male, age 72, unknown 155.2
2699 Male, age 18, unknown 154.1
1851 Male, age 51, unknown 149.3
2665 Male, age 74, both hemispheres 144.2
2409 Female, age 72, unknown 134.5
2590 Female, age 75, unknown 121.2
1916 Female, age 42, unknown 115.6
1941 Male, age 53, unknown 106.5
1889 Female, age 72, unknown 105.4
2583 Male, age 75, right hemisphere 81.6
Superior colliculus
nTPM: 120.6
2587 Male, age 74, left hemisphere 149.7
1913 Female, age 42, unknown 140.7
1839 Male, age 51, unknown 127.5
1995 Male, age 72, unknown 125.7
1796 Male, age 53, unknown 118.4
2261 Male, age 18, unknown 114.4
2668 Female, age 75, unknown 112.4
1895 Male, age 76, right hemisphere 110.4
2664 Male, age 75, both hemispheres 107.6
2087 Female, age 72, unknown 99.0
Ventral tegmental area
nTPM: 136.8
2223 Female, age 72, unknown 154.0
2021 Male, age 53, unknown 147.7
1915 Female, age 42, unknown 137.3
2410 Female, age 72, unknown 134.7
2218 Male, age 76, both hemispheres 124.6
1942 Male, age 51, unknown 122.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 503.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 503.1
Samples: 139

Max nTPM: 1717.7
Min nTPM: 211.2
Std nTPM: 197.4
Median nTPM: 473.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1717.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 995.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 992.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 948.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 931.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 921.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 815.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 814.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 782.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 773.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 773.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 388.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 388.2
Samples: 4

Max nTPM: 444.3
Min nTPM: 363.2
Sample A Female 444.3
Sample B Female 378.5
Sample C Male 363.2
Sample D Male 366.6
Midbrain
nTPM: 381.8
Samples: 4

Max nTPM: 541.0
Min nTPM: 286.5
Sample A Female 541.0
Sample B Female 410.7
Sample C Male 289.1
Sample D Male 286.5
Periaqueductal gray
nTPM: 323.3
Samples: 3

Max nTPM: 338.6
Min nTPM: 295.6
Sample B Female 335.6
Sample C Male 338.6
Sample D Male 295.6
Superior colliculi
nTPM: 379.2
Samples: 4

Max nTPM: 423.4
Min nTPM: 340.8
Sample A Female 423.4
Sample B Female 406.4
Sample C Male 340.8
Sample D Male 346.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 728.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 728.6
Samples: 4

Max nTPM: 751.6
Min nTPM: 693.5
Sample A Male 751.6
Sample B Male 741.9
Sample C Female 727.3
Sample D Female 693.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
69873295 Antisense, RP_050510_04_H12, Mouse strain C57BL/6J (56 days, male) 9.7

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