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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1.9
nTPM
HPA Brain:
219.4
nTPM
GTEx:
1.9
nTPM
AMYGDALA - HPA Brain RNA-seq
Max nTPM
219.4
Sample id
Sample description
nTPM
Amygdala nTPM: 142.5
2517
Female, age 94, left hemisphere
158.8
2695
Female, age 67, right hemisphere
145.0
2514
Male, age 75, right hemisphere
139.9
1987
Female, age 91, left hemisphere
134.9
2814
Male, age 76, right hemisphere
133.8
Basal amygdala nTPM: 206.0
2827
Female, age 67, right hemisphere
299.6
2685
Female, age 94, left hemisphere
219.7
2243
Female, age 91, right hemisphere
202.7
2110
Male, age 80, left hemisphere
174.1
1955
Male, age 76, both hemispheres
172.2
2609
Male, age 75, right hemisphere
167.7
Central amygdala nTPM: 182.2
2826
Female, age 94, left hemisphere
245.6
2701
Female, age 91, right hemisphere
192.5
2239
Male, age 80, left hemisphere
179.0
1905
Male, age 76, both hemispheres
152.2
2515
Male, age 75, right hemisphere
141.8
Corticomedial amygdala nTPM: 200.6
2535
Female, age 67, right hemisphere
260.5
2242
Female, age 91, right hemisphere
205.5
2240
Male, age 76, both hemispheres
201.5
2429
Female, age 94, left hemisphere
195.5
2829
Male, age 80, left hemisphere
181.0
2428
Male, age 75, right hemisphere
159.6
Lateral amygdala nTPM: 219.4
2830
Female, age 67, right hemisphere
394.6
2255
Female, age 91, right hemisphere
211.2
2534
Female, age 94, left hemisphere
199.4
2256
Male, age 80, left hemisphere
194.0
2516
Male, age 75, right hemisphere
171.4
1883
Male, age 76, both hemispheres
145.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 1.9
Samples: 152
Max nTPM: 8.8
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 1.8
The Human Protein Atlas project is funded
