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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1.5
nTPM
HPA Brain:
203.0
nTPM
GTEx:
1.5
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
203.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 171.3
2666
Male, age 74, left hemisphere
229.1
1830
Male, age 51, unknown
195.2
2219
Male, age 76, both hemispheres
189.4
1833
Male, age 53, unknown
178.5
2019
Male, age 18, unknown
170.7
2828
Female, age 72, unknown
170.1
2411
Female, age 72, unknown
150.8
1827
Male, age 72, unknown
149.9
2586
Male, age 75, left hemisphere
144.7
1870
Female, age 42, unknown
134.4
Dorsal raphe nucleus nTPM: 147.3
2047
Male, age 72, unknown
179.4
2750
Male, age 76, both hemispheres
172.9
2016
Female, age 72, unknown
141.5
1828
Male, age 53, unknown
140.1
2298
Female, age 72, unknown
102.6
Inferior colliculus nTPM: 155.5
2849
Male, age 72, unknown
169.3
1890
Male, age 53, unknown
168.5
1848
Female, age 42, unknown
154.5
2097
Female, age 72, unknown
129.6
Median raphe nucleus nTPM: 203.0
2220
Male, age 76, midline
203.0
Periaquaductal grey, anterior nTPM: 131.5
1947
Male, age 18, unknown
147.7
1795
Male, age 51, unknown
130.1
2502
Female, age 75, unknown
116.6
Periaquaductal grey, dorsal nTPM: 149.9
2464
Female, age 72, unknown
161.9
2850
Male, age 76, both hemispheres
158.9
1831
Male, age 72, unknown
149.1
1840
Male, age 53, unknown
129.7
Periaquaductal grey, lateral nTPM: 150.5
2140
Male, age 76, both hemispheres
175.3
2053
Male, age 18, unknown
147.2
2272
Male, age 74, both hemispheres
129.1
Pretectal area nTPM: 143.5
2316
Male, age 76, right hemisphere
192.6
2407
Male, age 75, both hemispheres
164.8
1944
Female, age 72, unknown
151.5
2667
Female, age 75, unknown
150.2
2825
Male, age 18, unknown
146.3
1815
Male, age 53, unknown
139.7
2224
Female, age 72, unknown
137.1
2007
Male, age 72, unknown
134.3
1816
Male, age 51, unknown
130.7
1817
Female, age 42, unknown
123.3
2273
Male, age 74, both hemispheres
107.7
Red nucleus nTPM: 168.2
2588
Male, age 74, left hemisphere
235.2
2823
Male, age 76, right hemisphere
217.0
2584
Male, age 75, left hemisphere
179.8
1865
Male, age 51, unknown
174.5
1904
Male, age 53, unknown
172.6
2769
Male, age 72, unknown
162.3
2785
Male, age 18, unknown
158.6
2227
Male, age 72, unknown
156.8
1954
Female, age 42, unknown
154.4
2503
Female, age 72, unknown
143.6
2725
Female, age 75, unknown
142.2
1821
Female, age 72, unknown
121.0
Substantia nigra nTPM: 153.0
2665
Male, age 74, both hemispheres
180.4
1941
Male, age 53, unknown
166.3
2241
Male, age 72, unknown
166.1
2583
Male, age 75, right hemisphere
165.7
2590
Female, age 75, unknown
153.1
2699
Male, age 18, unknown
149.7
2409
Female, age 72, unknown
148.6
1889
Female, age 72, unknown
142.9
1851
Male, age 51, unknown
133.5
1916
Female, age 42, unknown
123.4
Superior colliculus nTPM: 153.8
2668
Female, age 75, unknown
187.5
2087
Female, age 72, unknown
173.7
1913
Female, age 42, unknown
163.3
1895
Male, age 76, right hemisphere
161.7
2587
Male, age 74, left hemisphere
153.0
2664
Male, age 75, both hemispheres
152.0
1839
Male, age 51, unknown
146.5
2261
Male, age 18, unknown
140.3
1995
Male, age 72, unknown
132.6
1796
Male, age 53, unknown
127.0
Ventral tegmental area nTPM: 154.0
2021
Male, age 53, unknown
169.4
2223
Female, age 72, unknown
169.0
2218
Male, age 76, both hemispheres
165.2
1942
Male, age 51, unknown
163.4
2410
Female, age 72, unknown
131.1
1915
Female, age 42, unknown
126.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1.5
Samples: 139
Max nTPM: 6.0
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 1.4
The Human Protein Atlas project is funded
