HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:7.8 nTPM
HPA Brain:47.5 nTPM
GTEx:7.8 nTPM
FANTOM5:31.8 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:31.6 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034559
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 47.5
Sample id Sample description nTPM
Hippocampus
nTPM: 40.6
2529 Female, age 94, left hemisphere 48.5
1911 Female, age 85, right hemisphere 41.7
2621 Female, age 67, right hemisphere 41.1
1898 Male, age 80, left hemisphere 39.9
1855 Male, age 76, left hemisphere 36.4
2148 Female, age 91, left hemisphere 36.1
Dentate gyrus
nTPM: 39.3
2530 Female, age 94, left hemisphere 44.7
2531 Female, age 67, both hemispheres 42.7
2246 Female, age 85, both hemispheres 41.6
1927 Female, age 91, both hemispheres 40.5
2010 Male, age 76, both hemispheres 34.1
2528 Male, age 74, both hemispheres 32.4
Entorhinal gyrus
nTPM: 41.1
1938 Female, age 85, left hemisphere 47.0
2686 Male, age 75, right hemisphere 42.9
1787 Male, age 76, left hemisphere 42.0
2613 Female, age 94, left hemisphere 40.3
2117 Female, age 91, right hemisphere 39.4
2764 Male, age 80, right hemisphere 35.3
Hippocampus, CA1
nTPM: 38.7
2045 Male, age 76, both hemispheres 45.2
2749 Male, age 80, left hemisphere 43.7
1873 Female, age 85, both hemispheres 37.2
2527 Male, age 74, both hemispheres 36.2
2082 Female, age 91, right hemisphere 31.2
Hippocampus, CA2
nTPM: 40.6
1892 Male, age 76, both hemispheres 52.8
2437 Female, age 94, left hemisphere 48.1
1940 Female, age 85, left hemisphere 40.7
1963 Male, age 80, left hemisphere 39.5
2113 Female, age 91, right hemisphere 33.7
2249 Male, age 74, both hemispheres 29.0
Hippocampus, CA3
nTPM: 44.8
1867 Male, age 76, both hemispheres 51.7
2137 Male, age 80, left hemisphere 50.0
2861 Female, age 67, both hemispheres 49.0
1891 Female, age 85, both hemispheres 45.3
2620 Female, age 94, left hemisphere 39.6
2436 Male, age 74, both hemispheres 33.1
Parahippocampal cortex
nTPM: 44.7
2245 Female, age 91, both hemispheres 49.1
1850 Male, age 80, both hemispheres 48.0
2250 Female, age 67, right hemisphere 47.8
2532 Female, age 72, left hemisphere 47.3
2622 Female, age 67, right hemisphere 45.9
2693 Female, age 94, both hemispheres 45.8
1933 Female, age 85, both hemispheres 42.0
2018 Male, age 76, both hemispheres 40.5
2692 Male, age 74, both hemispheres 40.1
1990 Female, age 91, right hemisphere 40.0
Perirhinal gyrus
nTPM: 47.5
1841 Female, age 85, right hemisphere 51.6
1794 Male, age 80, right hemisphere 48.9
2848 Male, age 76, right hemisphere 47.4
2521 Female, age 94, right hemisphere 46.2
1847 Female, age 91, left hemisphere 43.6
Subiculum
nTPM: 43.2
2438 Female, age 94, left hemisphere 59.8
1901 Male, age 80, both hemispheres 48.2
1977 Female, age 85, both hemispheres 43.4
2619 Male, age 74, both hemispheres 37.9
2042 Male, age 76, both hemispheres 37.6
2729 Female, age 91, right hemisphere 32.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.8
Samples: 197

Max nTPM: 13.2
Min nTPM: 2.3
Std nTPM: 1.6
Median nTPM: 7.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 13.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 13.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 12.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 12.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 12.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 12.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 11.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 11.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 11.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 11.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 10.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.8
FF:10153-102I9 76 years, female 33.6
FF:10169-103B7 60 years, female 30.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Subiculum
nTPM: 17.4
Samples: 4

Max nTPM: 20.9
Min nTPM: 15.6
Sample A Female 20.9
Sample B Female 15.6
Sample C Male 15.9
Sample D Male 17.2
Dorsal hippocampus
nTPM: 15.1
Samples: 4

Max nTPM: 16.5
Min nTPM: 12.5
Sample A Female 15.8
Sample B Female 15.4
Sample C Male 16.5
Sample D Male 12.5
Entorhinal cortex
nTPM: 22.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 20.4
Sample A Female 24.8
Sample B Female 24.0
Sample C Male 21.8
Sample D Male 20.4
Ventral hippocampus
nTPM: 14.3
Samples: 4

Max nTPM: 15.0
Min nTPM: 13.4
Sample A Female 15.0
Sample B Female 13.4
Sample C Male 14.4
Sample D Male 14.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.6
Samples: 4

Max nTPM: 39.5
Min nTPM: 26.4
Sample A Male 29.6
Sample B Male 30.7
Sample C Female 26.4
Sample D Female 39.5
Hippocampal formation
nTPM: 27.9
Samples: 4

Max nTPM: 35.2
Min nTPM: 23.2
Sample A Male 24.4
Sample B Male 28.9
Sample C Female 35.2
Sample D Female 23.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
68918274 Antisense, RP_050301_02_B01, Mouse strain C57BL/6J (56 days, male) 2.1

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