MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.6 nTPM
HPA Brain:5.5 nTPM
GTEx:4.6 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:12.0 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.4
2411 Female, age 72, unknown 7.2
1870 Female, age 42, unknown 6.4
1833 Male, age 53, unknown 6.1
2586 Male, age 75, left hemisphere 5.8
2828 Female, age 72, unknown 5.7
1830 Male, age 51, unknown 5.5
2219 Male, age 76, both hemispheres 5.2
2666 Male, age 74, left hemisphere 4.6
1827 Male, age 72, unknown 4.1
2019 Male, age 18, unknown 3.4
Dorsal raphe nucleus
nTPM: 5.4
2298 Female, age 72, unknown 6.5
2750 Male, age 76, both hemispheres 6.3
2016 Female, age 72, unknown 5.4
1828 Male, age 53, unknown 4.8
2047 Male, age 72, unknown 3.8
Inferior colliculus
nTPM: 4.1
1848 Female, age 42, unknown 4.6
2849 Male, age 72, unknown 4.5
2097 Female, age 72, unknown 3.9
1890 Male, age 53, unknown 3.6
Median raphe nucleus
nTPM: 4.8
2220 Male, age 76, midline 4.8
Periaquaductal grey, anterior
nTPM: 5.1
1795 Male, age 51, unknown 5.9
1947 Male, age 18, unknown 4.7
2502 Female, age 75, unknown 4.6
Periaquaductal grey, dorsal
nTPM: 4.8
1831 Male, age 72, unknown 5.3
2464 Female, age 72, unknown 5.2
2850 Male, age 76, both hemispheres 4.6
1840 Male, age 53, unknown 4.2
Periaquaductal grey, lateral
nTPM: 4.8
2140 Male, age 76, both hemispheres 5.0
2053 Male, age 18, unknown 4.8
2272 Male, age 74, both hemispheres 4.4
Pretectal area
nTPM: 4.8
2273 Male, age 74, both hemispheres 5.9
1815 Male, age 53, unknown 5.5
2825 Male, age 18, unknown 5.4
2407 Male, age 75, both hemispheres 5.0
2667 Female, age 75, unknown 4.9
1817 Female, age 42, unknown 4.8
2224 Female, age 72, unknown 4.7
2007 Male, age 72, unknown 4.3
2316 Male, age 76, right hemisphere 4.3
1816 Male, age 51, unknown 4.0
1944 Female, age 72, unknown 3.6
Red nucleus
nTPM: 5.5
2823 Male, age 76, right hemisphere 7.0
2227 Male, age 72, unknown 6.7
1904 Male, age 53, unknown 6.4
2584 Male, age 75, left hemisphere 6.0
1954 Female, age 42, unknown 5.9
1865 Male, age 51, unknown 5.7
1821 Female, age 72, unknown 5.5
2503 Female, age 72, unknown 5.5
2785 Male, age 18, unknown 4.7
2769 Male, age 72, unknown 4.6
2725 Female, age 75, unknown 4.4
2588 Male, age 74, left hemisphere 4.2
Substantia nigra
nTPM: 4.9
2699 Male, age 18, unknown 6.7
2590 Female, age 75, unknown 6.3
1916 Female, age 42, unknown 5.4
2241 Male, age 72, unknown 5.3
1851 Male, age 51, unknown 5.1
2665 Male, age 74, both hemispheres 5.0
2583 Male, age 75, right hemisphere 4.9
1941 Male, age 53, unknown 4.4
1889 Female, age 72, unknown 4.2
2409 Female, age 72, unknown 1.1
Superior colliculus
nTPM: 5.4
1995 Male, age 72, unknown 7.1
1913 Female, age 42, unknown 6.1
2261 Male, age 18, unknown 5.9
2664 Male, age 75, both hemispheres 5.6
2587 Male, age 74, left hemisphere 5.5
1796 Male, age 53, unknown 5.0
1839 Male, age 51, unknown 5.0
1895 Male, age 76, right hemisphere 5.0
2668 Female, age 75, unknown 5.0
2087 Female, age 72, unknown 3.3
Ventral tegmental area
nTPM: 5.2
2410 Female, age 72, unknown 6.0
2223 Female, age 72, unknown 5.8
2021 Male, age 53, unknown 5.1
1915 Female, age 42, unknown 4.8
2218 Male, age 76, both hemispheres 4.8
1942 Male, age 51, unknown 4.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.6
Samples: 139

Max nTPM: 8.8
Min nTPM: 1.8
Std nTPM: 1.3
Median nTPM: 4.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 8.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 8.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 8.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 7.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 7.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 7.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 6.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 10.9
Sample C Male 12.3
Sample D Male 10.6
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.1
Sample A Female 9.8
Sample B Female 9.5
Sample C Male 6.1
Sample D Male 6.1
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 11.6
Min nTPM: 8.8
Sample B Female 9.5
Sample C Male 11.6
Sample D Male 8.8
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.9
Sample A Female 7.7
Sample B Female 5.9
Sample C Male 6.1
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 13.7
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 11.1
Sample C Female 13.7
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
76081033 Antisense, RP_060608_03_D06, Mouse strain C57BL/6J (56 days, male) 1.9

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