HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:23.8 nTPM
HPA Brain:26.9 nTPM
GTEx:23.8 nTPM
FANTOM5:39.7 Scaled Tags Per Million
Pig:16.3 nTPM
Mouse:12.7 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004722Antibody HPA004769
Glial cells Not detectedLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Hippocampus
nTPM: 25.5
2529 Female, age 94, left hemisphere 31.6
1911 Female, age 85, right hemisphere 27.9
2148 Female, age 91, left hemisphere 26.7
1855 Male, age 76, left hemisphere 24.2
2621 Female, age 67, right hemisphere 23.0
1898 Male, age 80, left hemisphere 19.5
Dentate gyrus
nTPM: 26.9
2010 Male, age 76, both hemispheres 29.1
2246 Female, age 85, both hemispheres 28.2
2528 Male, age 74, both hemispheres 27.7
2530 Female, age 94, left hemisphere 26.4
2531 Female, age 67, both hemispheres 25.7
1927 Female, age 91, both hemispheres 24.1
Entorhinal gyrus
nTPM: 25.0
2686 Male, age 75, right hemisphere 29.4
2764 Male, age 80, right hemisphere 28.6
2117 Female, age 91, right hemisphere 25.3
2613 Female, age 94, left hemisphere 24.4
1787 Male, age 76, left hemisphere 23.6
1938 Female, age 85, left hemisphere 18.5
Hippocampus, CA1
nTPM: 25.5
2082 Female, age 91, right hemisphere 34.3
2527 Male, age 74, both hemispheres 26.9
2045 Male, age 76, both hemispheres 23.8
1873 Female, age 85, both hemispheres 22.6
2749 Male, age 80, left hemisphere 19.8
Hippocampus, CA2
nTPM: 25.8
2113 Female, age 91, right hemisphere 29.1
1940 Female, age 85, left hemisphere 28.9
2437 Female, age 94, left hemisphere 28.8
2249 Male, age 74, both hemispheres 25.4
1963 Male, age 80, left hemisphere 23.4
1892 Male, age 76, both hemispheres 19.1
Hippocampus, CA3
nTPM: 25.8
2620 Female, age 94, left hemisphere 34.3
2436 Male, age 74, both hemispheres 28.3
1891 Female, age 85, both hemispheres 27.5
2861 Female, age 67, both hemispheres 24.9
2137 Male, age 80, left hemisphere 20.3
1867 Male, age 76, both hemispheres 19.4
Parahippocampal cortex
nTPM: 23.9
2018 Male, age 76, both hemispheres 28.7
2692 Male, age 74, both hemispheres 28.7
2622 Female, age 67, right hemisphere 28.0
1990 Female, age 91, right hemisphere 27.7
2532 Female, age 72, left hemisphere 25.0
2245 Female, age 91, both hemispheres 21.8
2693 Female, age 94, both hemispheres 21.8
1850 Male, age 80, both hemispheres 20.4
2250 Female, age 67, right hemisphere 19.3
1933 Female, age 85, both hemispheres 17.8
Perirhinal gyrus
nTPM: 20.3
2521 Female, age 94, right hemisphere 22.0
1794 Male, age 80, right hemisphere 21.3
2848 Male, age 76, right hemisphere 20.9
1847 Female, age 91, left hemisphere 20.0
1841 Female, age 85, right hemisphere 17.2
Subiculum
nTPM: 26.4
2729 Female, age 91, right hemisphere 29.1
2619 Male, age 74, both hemispheres 28.8
2042 Male, age 76, both hemispheres 28.0
1901 Male, age 80, both hemispheres 25.5
1977 Female, age 85, both hemispheres 23.7
2438 Female, age 94, left hemisphere 23.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.8
Samples: 197

Max nTPM: 53.0
Min nTPM: 9.0
Std nTPM: 6.1
Median nTPM: 23.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 50.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 44.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 41.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 35.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 35.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 35.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 34.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 34.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 33.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 33.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.7
FF:10153-102I9 76 years, female 50.4
FF:10169-103B7 60 years, female 29.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.3
Pig sample Sample description nTPM
Subiculum
nTPM: 16.3
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.4
Sample A Female 20.2
Sample B Female 15.6
Sample C Male 14.4
Sample D Male 14.8
Dorsal hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 19.2
Min nTPM: 11.6
Sample A Female 19.2
Sample B Female 13.7
Sample C Male 14.4
Sample D Male 11.6
Entorhinal cortex
nTPM: 14.0
Samples: 4

Max nTPM: 14.6
Min nTPM: 12.8
Sample A Female 14.6
Sample B Female 14.0
Sample C Male 14.4
Sample D Male 12.8
Ventral hippocampus
nTPM: 14.5
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.1
Sample A Female 15.5
Sample B Female 12.1
Sample C Male 16.9
Sample D Male 13.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.0
Sample A Male 12.9
Sample B Male 15.2
Sample C Female 11.4
Sample D Female 9.0
Hippocampal formation
nTPM: 12.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 12.4
Sample A Male 12.8
Sample B Male 13.2
Sample C Female 12.4
Sample D Female 12.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
68341579 Antisense, RP_041207_01_G09, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org