MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.0 nTPM
HPA Brain:124.8 nTPM
GTEx:56.0 nTPM
FANTOM5:122.7 Scaled Tags Per Million
Pig:91.9 nTPM
Mouse:71.3 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 124.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.6
1827 Male, age 72, unknown 112.3
2586 Male, age 75, left hemisphere 112.2
1870 Female, age 42, unknown 110.0
2019 Male, age 18, unknown 109.5
2666 Male, age 74, left hemisphere 108.3
2411 Female, age 72, unknown 107.9
2219 Male, age 76, both hemispheres 105.2
1830 Male, age 51, unknown 102.0
1833 Male, age 53, unknown 100.3
2828 Female, age 72, unknown 98.8
Dorsal raphe nucleus
nTPM: 106.3
2047 Male, age 72, unknown 117.0
1828 Male, age 53, unknown 114.9
2298 Female, age 72, unknown 102.0
2016 Female, age 72, unknown 101.5
2750 Male, age 76, both hemispheres 96.0
Inferior colliculus
nTPM: 113.1
2097 Female, age 72, unknown 120.5
1848 Female, age 42, unknown 113.3
1890 Male, age 53, unknown 111.4
2849 Male, age 72, unknown 107.3
Median raphe nucleus
nTPM: 103.1
2220 Male, age 76, midline 103.1
Periaquaductal grey, anterior
nTPM: 110.0
1947 Male, age 18, unknown 119.7
2502 Female, age 75, unknown 105.6
1795 Male, age 51, unknown 104.6
Periaquaductal grey, dorsal
nTPM: 109.5
1840 Male, age 53, unknown 117.0
1831 Male, age 72, unknown 113.5
2850 Male, age 76, both hemispheres 107.1
2464 Female, age 72, unknown 100.4
Periaquaductal grey, lateral
nTPM: 102.7
2140 Male, age 76, both hemispheres 109.6
2053 Male, age 18, unknown 106.0
2272 Male, age 74, both hemispheres 92.3
Pretectal area
nTPM: 116.4
1816 Male, age 51, unknown 137.0
1944 Female, age 72, unknown 127.9
2667 Female, age 75, unknown 123.4
1817 Female, age 42, unknown 119.5
2007 Male, age 72, unknown 119.4
2407 Male, age 75, both hemispheres 114.9
1815 Male, age 53, unknown 113.0
2273 Male, age 74, both hemispheres 107.3
2825 Male, age 18, unknown 107.3
2224 Female, age 72, unknown 106.8
2316 Male, age 76, right hemisphere 103.8
Red nucleus
nTPM: 102.4
2503 Female, age 72, unknown 110.4
2725 Female, age 75, unknown 110.3
1821 Female, age 72, unknown 108.2
2584 Male, age 75, left hemisphere 106.9
2823 Male, age 76, right hemisphere 105.3
2588 Male, age 74, left hemisphere 102.4
1865 Male, age 51, unknown 102.3
2785 Male, age 18, unknown 100.7
1954 Female, age 42, unknown 100.1
2769 Male, age 72, unknown 96.2
2227 Male, age 72, unknown 95.2
1904 Male, age 53, unknown 90.6
Substantia nigra
nTPM: 124.8
1941 Male, age 53, unknown 139.0
2241 Male, age 72, unknown 136.4
2665 Male, age 74, both hemispheres 133.5
1916 Female, age 42, unknown 125.9
2409 Female, age 72, unknown 123.1
1889 Female, age 72, unknown 119.9
1851 Male, age 51, unknown 119.7
2699 Male, age 18, unknown 119.3
2583 Male, age 75, right hemisphere 117.6
2590 Female, age 75, unknown 113.5
Superior colliculus
nTPM: 109.6
2664 Male, age 75, both hemispheres 131.4
2087 Female, age 72, unknown 120.4
1796 Male, age 53, unknown 111.5
2587 Male, age 74, left hemisphere 109.2
2668 Female, age 75, unknown 108.6
1895 Male, age 76, right hemisphere 108.1
2261 Male, age 18, unknown 107.7
1839 Male, age 51, unknown 102.8
1913 Female, age 42, unknown 100.3
1995 Male, age 72, unknown 96.4
Ventral tegmental area
nTPM: 113.0
1915 Female, age 42, unknown 121.1
2223 Female, age 72, unknown 117.7
1942 Male, age 51, unknown 115.6
2218 Male, age 76, both hemispheres 111.9
2021 Male, age 53, unknown 106.5
2410 Female, age 72, unknown 105.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.0
Samples: 139

Max nTPM: 135.8
Min nTPM: 34.2
Std nTPM: 13.8
Median nTPM: 52.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 135.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 93.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 81.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 80.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 77.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 76.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 76.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 75.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 75.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.7
FF:10158-103A5 76 years, female 122.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.0
Samples: 4

Max nTPM: 112.1
Min nTPM: 65.7
Sample A Female 105.3
Sample B Female 84.7
Sample C Male 112.1
Sample D Male 65.7
Midbrain
nTPM: 87.6
Samples: 4

Max nTPM: 99.3
Min nTPM: 78.9
Sample A Female 79.0
Sample B Female 99.3
Sample C Male 78.9
Sample D Male 93.1
Periaqueductal gray
nTPM: 88.5
Samples: 3

Max nTPM: 97.1
Min nTPM: 78.5
Sample B Female 89.8
Sample C Male 97.1
Sample D Male 78.5
Superior colliculi
nTPM: 81.1
Samples: 4

Max nTPM: 88.1
Min nTPM: 76.1
Sample A Female 88.1
Sample B Female 76.1
Sample C Male 81.2
Sample D Male 78.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.3
Samples: 4

Max nTPM: 76.7
Min nTPM: 63.8
Sample A Male 63.8
Sample B Male 73.4
Sample C Female 76.7
Sample D Female 71.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
74821970 Antisense, RP_060321_02_F08, Mouse strain C57BL/6J (56 days, male) 4.3

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