HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:48.5 nTPM
GTEx:16.6 nTPM
FANTOM5:54.7 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:15.5 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047486
Glial cells Not detected
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.5
Sample id Sample description nTPM
Hippocampus
nTPM: 39.2
1898 Male, age 80, left hemisphere 55.2
2148 Female, age 91, left hemisphere 38.5
1855 Male, age 76, left hemisphere 38.2
2621 Female, age 67, right hemisphere 35.4
2529 Female, age 94, left hemisphere 35.3
1911 Female, age 85, right hemisphere 32.9
Dentate gyrus
nTPM: 43.1
1927 Female, age 91, both hemispheres 58.2
2530 Female, age 94, left hemisphere 44.8
2531 Female, age 67, both hemispheres 39.9
2010 Male, age 76, both hemispheres 39.5
2246 Female, age 85, both hemispheres 38.2
2528 Male, age 74, both hemispheres 37.6
Entorhinal gyrus
nTPM: 31.6
1938 Female, age 85, left hemisphere 35.1
2764 Male, age 80, right hemisphere 34.5
1787 Male, age 76, left hemisphere 33.9
2686 Male, age 75, right hemisphere 30.5
2613 Female, age 94, left hemisphere 28.2
2117 Female, age 91, right hemisphere 27.2
Hippocampus, CA1
nTPM: 48.5
2749 Male, age 80, left hemisphere 76.9
1873 Female, age 85, both hemispheres 47.5
2082 Female, age 91, right hemisphere 41.6
2045 Male, age 76, both hemispheres 39.5
2527 Male, age 74, both hemispheres 36.8
Hippocampus, CA2
nTPM: 43.0
1892 Male, age 76, both hemispheres 55.4
1963 Male, age 80, left hemisphere 48.9
1940 Female, age 85, left hemisphere 41.2
2113 Female, age 91, right hemisphere 39.9
2249 Male, age 74, both hemispheres 39.3
2437 Female, age 94, left hemisphere 33.5
Hippocampus, CA3
nTPM: 46.7
2137 Male, age 80, left hemisphere 65.8
2620 Female, age 94, left hemisphere 50.1
1867 Male, age 76, both hemispheres 47.1
2436 Male, age 74, both hemispheres 42.9
2861 Female, age 67, both hemispheres 40.9
1891 Female, age 85, both hemispheres 33.1
Parahippocampal cortex
nTPM: 37.6
1850 Male, age 80, both hemispheres 53.2
2245 Female, age 91, both hemispheres 43.7
1933 Female, age 85, both hemispheres 39.6
2693 Female, age 94, both hemispheres 38.2
1990 Female, age 91, right hemisphere 36.7
2250 Female, age 67, right hemisphere 35.6
2532 Female, age 72, left hemisphere 34.7
2622 Female, age 67, right hemisphere 32.1
2018 Male, age 76, both hemispheres 31.6
2692 Male, age 74, both hemispheres 30.5
Perirhinal gyrus
nTPM: 47.2
1794 Male, age 80, right hemisphere 53.6
1847 Female, age 91, left hemisphere 50.7
1841 Female, age 85, right hemisphere 50.0
2521 Female, age 94, right hemisphere 44.5
2848 Male, age 76, right hemisphere 36.9
Subiculum
nTPM: 33.3
1901 Male, age 80, both hemispheres 43.2
2729 Female, age 91, right hemisphere 36.3
1977 Female, age 85, both hemispheres 33.1
2438 Female, age 94, left hemisphere 31.8
2619 Male, age 74, both hemispheres 29.0
2042 Male, age 76, both hemispheres 26.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.6
Samples: 197

Max nTPM: 38.5
Min nTPM: 5.9
Std nTPM: 4.3
Median nTPM: 16.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 38.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 30.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 27.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 27.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 26.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 26.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 26.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 25.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 25.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 24.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 24.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.7
FF:10169-103B7 60 years, female 85.1
FF:10153-102I9 76 years, female 24.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Subiculum
nTPM: 19.9
Samples: 4

Max nTPM: 29.8
Min nTPM: 15.0
Sample A Female 17.9
Sample B Female 15.0
Sample C Male 17.0
Sample D Male 29.8
Dorsal hippocampus
nTPM: 16.3
Samples: 4

Max nTPM: 23.0
Min nTPM: 10.8
Sample A Female 13.1
Sample B Female 18.1
Sample C Male 10.8
Sample D Male 23.0
Entorhinal cortex
nTPM: 22.6
Samples: 4

Max nTPM: 32.9
Min nTPM: 16.7
Sample A Female 23.2
Sample B Female 32.9
Sample C Male 16.7
Sample D Male 17.7
Ventral hippocampus
nTPM: 12.1
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.2
Sample A Female 11.4
Sample B Female 11.2
Sample C Male 14.4
Sample D Male 11.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.5
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.9
Sample A Male 14.4
Sample B Male 13.9
Sample C Female 15.1
Sample D Female 18.6
Hippocampal formation
nTPM: 13.3
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.5
Sample A Male 12.9
Sample B Male 14.5
Sample C Female 12.5
Sample D Female 13.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
71717686 Antisense, RP_050808_02_B07, Mouse strain C57BL/6J (56 days, male) 0.7
67936387 Antisense, RP_040324_01_H07, Mouse strain C57BL/6J (56 days, male) 0.6
77887860 Antisense, RP_070208_04_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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