MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA Brain:30.2 nTPM
GTEx:6.9 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:10.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
2219 Male, age 76, both hemispheres 33.4
1830 Male, age 51, unknown 31.2
1833 Male, age 53, unknown 31.2
2586 Male, age 75, left hemisphere 28.9
2828 Female, age 72, unknown 28.9
2019 Male, age 18, unknown 28.3
1870 Female, age 42, unknown 27.9
2666 Male, age 74, left hemisphere 27.8
2411 Female, age 72, unknown 24.6
1827 Male, age 72, unknown 24.4
Dorsal raphe nucleus
nTPM: 21.8
2750 Male, age 76, both hemispheres 26.5
2016 Female, age 72, unknown 22.5
1828 Male, age 53, unknown 21.9
2047 Male, age 72, unknown 20.4
2298 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 24.8
2849 Male, age 72, unknown 28.7
1890 Male, age 53, unknown 26.5
1848 Female, age 42, unknown 23.7
2097 Female, age 72, unknown 20.3
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 22.9
2502 Female, age 75, unknown 24.1
1947 Male, age 18, unknown 22.4
1795 Male, age 51, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 25.4
2850 Male, age 76, both hemispheres 31.0
1831 Male, age 72, unknown 26.4
2464 Female, age 72, unknown 23.7
1840 Male, age 53, unknown 20.4
Periaquaductal grey, lateral
nTPM: 26.1
2140 Male, age 76, both hemispheres 27.1
2053 Male, age 18, unknown 26.4
2272 Male, age 74, both hemispheres 24.7
Pretectal area
nTPM: 27.8
2407 Male, age 75, both hemispheres 31.5
1815 Male, age 53, unknown 31.1
1817 Female, age 42, unknown 30.5
2667 Female, age 75, unknown 29.8
1816 Male, age 51, unknown 28.3
1944 Female, age 72, unknown 28.3
2007 Male, age 72, unknown 28.2
2316 Male, age 76, right hemisphere 28.2
2825 Male, age 18, unknown 23.9
2273 Male, age 74, both hemispheres 22.9
2224 Female, age 72, unknown 22.7
Red nucleus
nTPM: 30.2
1865 Male, age 51, unknown 34.9
1904 Male, age 53, unknown 32.3
2823 Male, age 76, right hemisphere 32.2
2503 Female, age 72, unknown 31.8
2588 Male, age 74, left hemisphere 31.3
2785 Male, age 18, unknown 31.3
2725 Female, age 75, unknown 29.3
2227 Male, age 72, unknown 28.9
2769 Male, age 72, unknown 28.8
2584 Male, age 75, left hemisphere 28.2
1954 Female, age 42, unknown 27.4
1821 Female, age 72, unknown 26.3
Substantia nigra
nTPM: 26.4
2699 Male, age 18, unknown 30.9
2583 Male, age 75, right hemisphere 29.0
1889 Female, age 72, unknown 28.1
2665 Male, age 74, both hemispheres 27.3
1941 Male, age 53, unknown 25.4
1851 Male, age 51, unknown 25.0
2409 Female, age 72, unknown 24.8
1916 Female, age 42, unknown 24.7
2590 Female, age 75, unknown 24.6
2241 Male, age 72, unknown 23.9
Superior colliculus
nTPM: 28.0
1913 Female, age 42, unknown 33.7
1995 Male, age 72, unknown 32.9
2587 Male, age 74, left hemisphere 28.6
1895 Male, age 76, right hemisphere 28.2
2261 Male, age 18, unknown 26.9
2668 Female, age 75, unknown 26.9
2087 Female, age 72, unknown 26.4
1796 Male, age 53, unknown 26.1
2664 Male, age 75, both hemispheres 26.1
1839 Male, age 51, unknown 24.2
Ventral tegmental area
nTPM: 25.3
2218 Male, age 76, both hemispheres 27.4
2223 Female, age 72, unknown 27.4
2410 Female, age 72, unknown 26.4
1942 Male, age 51, unknown 24.2
2021 Male, age 53, unknown 23.9
1915 Female, age 42, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 139

Max nTPM: 15.6
Min nTPM: 4.1
Std nTPM: 1.6
Median nTPM: 6.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 13.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 11.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 10.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 10.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 9.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 9.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 9.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 28.0
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 21.9
Sample C Male 24.3
Sample D Male 28.0
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 29.3
Min nTPM: 21.9
Sample A Female 28.3
Sample B Female 24.1
Sample C Male 29.3
Sample D Male 21.9
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 21.9
Min nTPM: 21.0
Sample B Female 21.5
Sample C Male 21.0
Sample D Male 21.9
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 20.5
Sample A Female 21.3
Sample B Female 20.5
Sample C Male 28.2
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 11.1
Sample C Female 11.2
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70539109 Antisense, RP_050321_02_H10, Mouse strain C57BL/6J (56 days, male) 1.1

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