MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:28.9 nTPM
GTEx:9.7 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:1.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2586 Male, age 75, left hemisphere 28.8
2828 Female, age 72, unknown 24.6
1827 Male, age 72, unknown 21.8
1870 Female, age 42, unknown 21.3
1830 Male, age 51, unknown 20.3
2411 Female, age 72, unknown 20.3
2019 Male, age 18, unknown 19.2
2666 Male, age 74, left hemisphere 19.1
1833 Male, age 53, unknown 18.8
2219 Male, age 76, both hemispheres 18.2
Dorsal raphe nucleus
nTPM: 19.2
2047 Male, age 72, unknown 21.0
2750 Male, age 76, both hemispheres 21.0
2016 Female, age 72, unknown 18.9
2298 Female, age 72, unknown 18.3
1828 Male, age 53, unknown 16.9
Inferior colliculus
nTPM: 17.2
1848 Female, age 42, unknown 18.8
2849 Male, age 72, unknown 18.7
2097 Female, age 72, unknown 16.0
1890 Male, age 53, unknown 15.4
Median raphe nucleus
nTPM: 20.3
2220 Male, age 76, midline 20.3
Periaquaductal grey, anterior
nTPM: 28.9
1947 Male, age 18, unknown 32.6
1795 Male, age 51, unknown 28.0
2502 Female, age 75, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 20.8
1840 Male, age 53, unknown 18.2
2464 Female, age 72, unknown 17.8
1831 Male, age 72, unknown 15.6
Periaquaductal grey, lateral
nTPM: 24.6
2272 Male, age 74, both hemispheres 30.9
2140 Male, age 76, both hemispheres 23.0
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 22.3
2273 Male, age 74, both hemispheres 27.5
2007 Male, age 72, unknown 23.5
1817 Female, age 42, unknown 22.6
2224 Female, age 72, unknown 22.6
1815 Male, age 53, unknown 22.5
2825 Male, age 18, unknown 22.5
1816 Male, age 51, unknown 22.2
2407 Male, age 75, both hemispheres 20.9
2316 Male, age 76, right hemisphere 20.7
1944 Female, age 72, unknown 20.6
2667 Female, age 75, unknown 19.5
Red nucleus
nTPM: 21.1
2503 Female, age 72, unknown 23.8
2725 Female, age 75, unknown 23.0
2785 Male, age 18, unknown 22.7
2227 Male, age 72, unknown 22.3
1904 Male, age 53, unknown 21.8
2584 Male, age 75, left hemisphere 20.9
2769 Male, age 72, unknown 20.9
1954 Female, age 42, unknown 20.8
1865 Male, age 51, unknown 20.2
2588 Male, age 74, left hemisphere 19.8
1821 Female, age 72, unknown 18.6
2823 Male, age 76, right hemisphere 18.0
Substantia nigra
nTPM: 20.1
2583 Male, age 75, right hemisphere 23.3
2590 Female, age 75, unknown 22.7
1941 Male, age 53, unknown 22.5
1916 Female, age 42, unknown 22.1
1851 Male, age 51, unknown 21.8
2665 Male, age 74, both hemispheres 19.6
2699 Male, age 18, unknown 19.2
1889 Female, age 72, unknown 17.7
2241 Male, age 72, unknown 16.2
2409 Female, age 72, unknown 16.1
Superior colliculus
nTPM: 21.1
2664 Male, age 75, both hemispheres 25.0
1796 Male, age 53, unknown 24.1
2261 Male, age 18, unknown 23.3
1913 Female, age 42, unknown 21.7
1995 Male, age 72, unknown 21.5
1839 Male, age 51, unknown 21.3
2668 Female, age 75, unknown 21.1
2587 Male, age 74, left hemisphere 19.4
2087 Female, age 72, unknown 18.0
1895 Male, age 76, right hemisphere 15.3
Ventral tegmental area
nTPM: 20.5
2410 Female, age 72, unknown 21.3
2021 Male, age 53, unknown 21.1
2223 Female, age 72, unknown 20.8
1915 Female, age 42, unknown 20.7
1942 Male, age 51, unknown 20.4
2218 Male, age 76, both hemispheres 19.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 14.7
Min nTPM: 6.1
Std nTPM: 1.8
Median nTPM: 9.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 14.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 13.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 13.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 13.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 12.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 6.7
Sample A Female 13.4
Sample B Female 8.2
Sample C Male 8.9
Sample D Male 6.7
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.7
Sample A Female 10.2
Sample B Female 10.9
Sample C Male 10.4
Sample D Male 9.7
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 12.5
Min nTPM: 10.1
Sample B Female 12.5
Sample C Male 10.1
Sample D Male 10.4
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.4
Sample A Female 10.9
Sample B Female 9.4
Sample C Male 9.7
Sample D Male 10.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.7
Sample A Male 1.7
Sample B Male 1.6
Sample C Female 1.2
Sample D Female 0.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70302872 Antisense, RP_050609_01_A09, Mouse strain C57BL/6J (56 days, male) 1.4

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