MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA Brain:50.6 nTPM
GTEx:2.4 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:40.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
2019 Male, age 18, unknown 58.2
1827 Male, age 72, unknown 47.7
2411 Female, age 72, unknown 47.4
2586 Male, age 75, left hemisphere 43.9
1870 Female, age 42, unknown 43.5
2666 Male, age 74, left hemisphere 39.5
2828 Female, age 72, unknown 36.9
1830 Male, age 51, unknown 36.4
1833 Male, age 53, unknown 36.4
2219 Male, age 76, both hemispheres 31.6
Dorsal raphe nucleus
nTPM: 43.4
2298 Female, age 72, unknown 54.5
2016 Female, age 72, unknown 44.0
2047 Male, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 39.4
1828 Male, age 53, unknown 39.2
Inferior colliculus
nTPM: 48.3
2097 Female, age 72, unknown 58.9
1890 Male, age 53, unknown 47.5
1848 Female, age 42, unknown 44.5
2849 Male, age 72, unknown 42.3
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Periaquaductal grey, anterior
nTPM: 46.6
2502 Female, age 75, unknown 59.3
1795 Male, age 51, unknown 40.7
1947 Male, age 18, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 48.8
1840 Male, age 53, unknown 60.3
2850 Male, age 76, both hemispheres 46.9
2464 Female, age 72, unknown 45.1
1831 Male, age 72, unknown 42.7
Periaquaductal grey, lateral
nTPM: 42.5
2140 Male, age 76, both hemispheres 45.9
2053 Male, age 18, unknown 45.7
2272 Male, age 74, both hemispheres 36.0
Pretectal area
nTPM: 50.6
1816 Male, age 51, unknown 62.1
2007 Male, age 72, unknown 60.9
1944 Female, age 72, unknown 58.1
1817 Female, age 42, unknown 57.5
1815 Male, age 53, unknown 56.9
2224 Female, age 72, unknown 53.6
2667 Female, age 75, unknown 43.7
2273 Male, age 74, both hemispheres 42.9
2316 Male, age 76, right hemisphere 41.9
2825 Male, age 18, unknown 41.8
2407 Male, age 75, both hemispheres 37.5
Red nucleus
nTPM: 36.5
2785 Male, age 18, unknown 48.1
2503 Female, age 72, unknown 40.2
1821 Female, age 72, unknown 38.8
1904 Male, age 53, unknown 38.2
2584 Male, age 75, left hemisphere 38.1
2227 Male, age 72, unknown 35.7
2725 Female, age 75, unknown 35.3
2588 Male, age 74, left hemisphere 35.0
1954 Female, age 42, unknown 33.4
2823 Male, age 76, right hemisphere 32.5
1865 Male, age 51, unknown 31.9
2769 Male, age 72, unknown 30.4
Substantia nigra
nTPM: 47.0
2241 Male, age 72, unknown 57.1
2665 Male, age 74, both hemispheres 55.7
1889 Female, age 72, unknown 52.1
2583 Male, age 75, right hemisphere 51.6
2409 Female, age 72, unknown 49.9
1851 Male, age 51, unknown 48.3
1916 Female, age 42, unknown 44.0
2590 Female, age 75, unknown 42.8
1941 Male, age 53, unknown 36.0
2699 Male, age 18, unknown 33.0
Superior colliculus
nTPM: 46.5
2587 Male, age 74, left hemisphere 50.1
2087 Female, age 72, unknown 49.8
1796 Male, age 53, unknown 48.9
2664 Male, age 75, both hemispheres 48.0
2668 Female, age 75, unknown 45.6
1839 Male, age 51, unknown 45.4
1913 Female, age 42, unknown 45.1
1995 Male, age 72, unknown 45.0
2261 Male, age 18, unknown 44.6
1895 Male, age 76, right hemisphere 42.7
Ventral tegmental area
nTPM: 45.0
1942 Male, age 51, unknown 51.5
1915 Female, age 42, unknown 47.6
2021 Male, age 53, unknown 46.0
2223 Female, age 72, unknown 42.5
2410 Female, age 72, unknown 41.9
2218 Male, age 76, both hemispheres 40.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 7.1
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 2.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 7.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 5.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 5.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 5.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 5.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 4.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.9
FF:10158-103A5 76 years, female 18.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 38.3
Min nTPM: 27.6
Sample A Female 38.3
Sample B Female 28.7
Sample C Male 32.6
Sample D Male 27.6
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 40.9
Sample A Female 47.9
Sample B Female 40.9
Sample C Male 42.8
Sample D Male 51.4
Periaqueductal gray
nTPM: 42.1
Samples: 3

Max nTPM: 44.2
Min nTPM: 39.4
Sample B Female 39.4
Sample C Male 42.8
Sample D Male 44.2
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 44.3
Min nTPM: 33.9
Sample A Female 42.7
Sample B Female 33.9
Sample C Male 38.9
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 43.1
Min nTPM: 37.5
Sample A Male 37.7
Sample B Male 43.1
Sample C Female 42.3
Sample D Female 37.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70793953 Antisense, RP_050712_01_A12, Mouse strain C57BL/6J (56 days, male) 0.1
70723032 Antisense, RP_050630_03_H09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org