MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA Brain:44.2 nTPM
GTEx:24.6 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:28.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.4
1830 Male, age 51, unknown 48.4
1833 Male, age 53, unknown 45.7
1870 Female, age 42, unknown 45.6
2219 Male, age 76, both hemispheres 39.8
2019 Male, age 18, unknown 39.3
1827 Male, age 72, unknown 38.7
2411 Female, age 72, unknown 38.5
2666 Male, age 74, left hemisphere 38.5
2828 Female, age 72, unknown 37.5
2586 Male, age 75, left hemisphere 31.6
Dorsal raphe nucleus
nTPM: 36.7
2750 Male, age 76, both hemispheres 41.5
2016 Female, age 72, unknown 39.0
1828 Male, age 53, unknown 35.2
2047 Male, age 72, unknown 35.2
2298 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 39.9
2849 Male, age 72, unknown 40.7
2097 Female, age 72, unknown 40.5
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 38.2
Median raphe nucleus
nTPM: 39.1
2220 Male, age 76, midline 39.1
Periaquaductal grey, anterior
nTPM: 34.3
1947 Male, age 18, unknown 39.0
1795 Male, age 51, unknown 33.4
2502 Female, age 75, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 37.7
2850 Male, age 76, both hemispheres 41.1
2464 Female, age 72, unknown 38.9
1831 Male, age 72, unknown 37.0
1840 Male, age 53, unknown 33.7
Periaquaductal grey, lateral
nTPM: 37.8
2053 Male, age 18, unknown 40.4
2272 Male, age 74, both hemispheres 36.9
2140 Male, age 76, both hemispheres 36.2
Pretectal area
nTPM: 39.5
2667 Female, age 75, unknown 46.1
2316 Male, age 76, right hemisphere 43.8
2407 Male, age 75, both hemispheres 40.3
1815 Male, age 53, unknown 39.5
2224 Female, age 72, unknown 39.5
1944 Female, age 72, unknown 39.0
2273 Male, age 74, both hemispheres 38.0
2825 Male, age 18, unknown 38.0
2007 Male, age 72, unknown 37.2
1816 Male, age 51, unknown 36.6
1817 Female, age 42, unknown 36.0
Red nucleus
nTPM: 44.2
1904 Male, age 53, unknown 50.3
1865 Male, age 51, unknown 49.7
2823 Male, age 76, right hemisphere 49.5
1954 Female, age 42, unknown 47.0
1821 Female, age 72, unknown 44.9
2725 Female, age 75, unknown 44.1
2503 Female, age 72, unknown 42.1
2785 Male, age 18, unknown 42.1
2769 Male, age 72, unknown 41.1
2227 Male, age 72, unknown 40.8
2588 Male, age 74, left hemisphere 39.6
2584 Male, age 75, left hemisphere 39.2
Substantia nigra
nTPM: 39.9
2241 Male, age 72, unknown 49.5
2590 Female, age 75, unknown 41.9
1889 Female, age 72, unknown 41.2
2583 Male, age 75, right hemisphere 40.6
1941 Male, age 53, unknown 40.4
2699 Male, age 18, unknown 39.6
2409 Female, age 72, unknown 39.3
1851 Male, age 51, unknown 36.1
1916 Female, age 42, unknown 36.1
2665 Male, age 74, both hemispheres 34.3
Superior colliculus
nTPM: 39.0
1895 Male, age 76, right hemisphere 48.7
1913 Female, age 42, unknown 44.9
2087 Female, age 72, unknown 41.3
1995 Male, age 72, unknown 40.7
2587 Male, age 74, left hemisphere 40.6
1839 Male, age 51, unknown 37.5
2261 Male, age 18, unknown 35.2
2668 Female, age 75, unknown 35.0
2664 Male, age 75, both hemispheres 33.3
1796 Male, age 53, unknown 32.8
Ventral tegmental area
nTPM: 38.8
2223 Female, age 72, unknown 42.9
2218 Male, age 76, both hemispheres 40.8
2021 Male, age 53, unknown 39.5
2410 Female, age 72, unknown 38.3
1915 Female, age 42, unknown 36.2
1942 Male, age 51, unknown 35.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 139

Max nTPM: 49.3
Min nTPM: 11.2
Std nTPM: 6.9
Median nTPM: 22.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 44.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 43.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 39.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 35.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.7
Samples: 4

Max nTPM: 35.8
Min nTPM: 32.1
Sample A Female 35.5
Sample B Female 35.3
Sample C Male 32.1
Sample D Male 35.8
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 46.5
Min nTPM: 34.5
Sample A Female 46.5
Sample B Female 38.0
Sample C Male 44.1
Sample D Male 34.5
Periaqueductal gray
nTPM: 33.3
Samples: 3

Max nTPM: 35.6
Min nTPM: 30.8
Sample B Female 33.6
Sample C Male 30.8
Sample D Male 35.6
Superior colliculi
nTPM: 38.7
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.2
Sample A Female 37.2
Sample B Female 35.3
Sample C Male 46.9
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 33.6
Min nTPM: 25.1
Sample A Male 33.6
Sample B Male 29.2
Sample C Female 25.4
Sample D Female 25.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71723833 Antisense, RP_050921_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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