MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:27.9 nTPM
GTEx:8.3 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:40.7 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2586 Male, age 75, left hemisphere 35.6
2411 Female, age 72, unknown 22.3
1827 Male, age 72, unknown 21.9
1870 Female, age 42, unknown 20.0
2828 Female, age 72, unknown 19.8
2019 Male, age 18, unknown 19.2
1833 Male, age 53, unknown 18.2
1830 Male, age 51, unknown 17.4
2219 Male, age 76, both hemispheres 16.7
2666 Male, age 74, left hemisphere 16.4
Dorsal raphe nucleus
nTPM: 22.9
2047 Male, age 72, unknown 28.9
1828 Male, age 53, unknown 24.0
2298 Female, age 72, unknown 22.8
2016 Female, age 72, unknown 22.3
2750 Male, age 76, both hemispheres 16.8
Inferior colliculus
nTPM: 25.0
1848 Female, age 42, unknown 30.2
2849 Male, age 72, unknown 25.7
2097 Female, age 72, unknown 24.3
1890 Male, age 53, unknown 19.7
Median raphe nucleus
nTPM: 16.9
2220 Male, age 76, midline 16.9
Periaquaductal grey, anterior
nTPM: 27.9
2502 Female, age 75, unknown 37.5
1795 Male, age 51, unknown 24.3
1947 Male, age 18, unknown 22.0
Periaquaductal grey, dorsal
nTPM: 24.1
1840 Male, age 53, unknown 32.0
2464 Female, age 72, unknown 25.7
2850 Male, age 76, both hemispheres 20.6
1831 Male, age 72, unknown 17.9
Periaquaductal grey, lateral
nTPM: 22.5
2140 Male, age 76, both hemispheres 27.5
2053 Male, age 18, unknown 23.0
2272 Male, age 74, both hemispheres 17.0
Pretectal area
nTPM: 18.5
2224 Female, age 72, unknown 22.7
2825 Male, age 18, unknown 22.3
2407 Male, age 75, both hemispheres 20.9
1944 Female, age 72, unknown 20.1
2316 Male, age 76, right hemisphere 19.7
2007 Male, age 72, unknown 19.1
1816 Male, age 51, unknown 17.5
2273 Male, age 74, both hemispheres 16.7
1815 Male, age 53, unknown 16.5
1817 Female, age 42, unknown 15.7
2667 Female, age 75, unknown 12.1
Red nucleus
nTPM: 14.5
2725 Female, age 75, unknown 22.2
2584 Male, age 75, left hemisphere 20.9
2769 Male, age 72, unknown 17.3
2785 Male, age 18, unknown 15.6
2588 Male, age 74, left hemisphere 15.4
2227 Male, age 72, unknown 15.1
2503 Female, age 72, unknown 13.6
1821 Female, age 72, unknown 11.7
1954 Female, age 42, unknown 11.6
1865 Male, age 51, unknown 11.4
2823 Male, age 76, right hemisphere 10.5
1904 Male, age 53, unknown 8.9
Substantia nigra
nTPM: 21.1
1916 Female, age 42, unknown 26.7
1851 Male, age 51, unknown 24.5
1941 Male, age 53, unknown 23.6
2665 Male, age 74, both hemispheres 23.5
2590 Female, age 75, unknown 23.1
2241 Male, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 21.2
2699 Male, age 18, unknown 16.8
1889 Female, age 72, unknown 16.3
2409 Female, age 72, unknown 13.3
Superior colliculus
nTPM: 20.0
2664 Male, age 75, both hemispheres 34.5
1796 Male, age 53, unknown 27.3
1839 Male, age 51, unknown 23.7
2261 Male, age 18, unknown 21.4
1895 Male, age 76, right hemisphere 21.3
2587 Male, age 74, left hemisphere 19.6
2087 Female, age 72, unknown 17.6
1913 Female, age 42, unknown 12.0
1995 Male, age 72, unknown 11.5
2668 Female, age 75, unknown 11.5
Ventral tegmental area
nTPM: 22.1
1942 Male, age 51, unknown 24.7
1915 Female, age 42, unknown 23.6
2021 Male, age 53, unknown 22.1
2410 Female, age 72, unknown 21.3
2223 Female, age 72, unknown 21.1
2218 Male, age 76, both hemispheres 20.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 139

Max nTPM: 26.6
Min nTPM: 2.0
Std nTPM: 4.0
Median nTPM: 7.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 26.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 17.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 15.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 14.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 14.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 14.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 14.1
Min nTPM: 7.2
Sample A Female 14.1
Sample B Female 10.4
Sample C Male 13.6
Sample D Male 7.2
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 10.9
Sample C Male 15.3
Sample D Male 27.0
Periaqueductal gray
nTPM: 14.5
Samples: 3

Max nTPM: 18.5
Min nTPM: 11.4
Sample B Female 13.7
Sample C Male 18.5
Sample D Male 11.4
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 20.9
Min nTPM: 4.9
Sample A Female 20.9
Sample B Female 4.9
Sample C Male 14.5
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 41.2
Min nTPM: 40.3
Sample A Male 40.3
Sample B Male 40.7
Sample C Female 41.2
Sample D Female 40.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69817976 Antisense, RP_050510_04_B07, Mouse strain C57BL/6J (56 days, male) 4.6

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