MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1479.3 nTPM
HPA Brain:293.9 nTPM
GTEx:1479.3 nTPM
FANTOM5:29.8 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:273.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 293.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 239.4
2666 Male, age 74, left hemisphere 308.5
2411 Female, age 72, unknown 284.5
2019 Male, age 18, unknown 262.6
1870 Female, age 42, unknown 259.8
1827 Male, age 72, unknown 242.4
2828 Female, age 72, unknown 225.6
1833 Male, age 53, unknown 215.7
2586 Male, age 75, left hemisphere 214.8
1830 Male, age 51, unknown 209.9
2219 Male, age 76, both hemispheres 170.3
Dorsal raphe nucleus
nTPM: 264.7
2298 Female, age 72, unknown 334.3
2016 Female, age 72, unknown 272.6
2750 Male, age 76, both hemispheres 257.2
1828 Male, age 53, unknown 241.5
2047 Male, age 72, unknown 218.0
Inferior colliculus
nTPM: 223.9
2097 Female, age 72, unknown 292.9
1890 Male, age 53, unknown 251.9
1848 Female, age 42, unknown 190.0
2849 Male, age 72, unknown 160.9
Median raphe nucleus
nTPM: 217.1
2220 Male, age 76, midline 217.1
Periaquaductal grey, anterior
nTPM: 253.1
2502 Female, age 75, unknown 314.0
1795 Male, age 51, unknown 223.2
1947 Male, age 18, unknown 222.0
Periaquaductal grey, dorsal
nTPM: 223.1
1831 Male, age 72, unknown 239.6
1840 Male, age 53, unknown 228.8
2464 Female, age 72, unknown 219.9
2850 Male, age 76, both hemispheres 204.1
Periaquaductal grey, lateral
nTPM: 210.9
2053 Male, age 18, unknown 252.8
2140 Male, age 76, both hemispheres 206.1
2272 Male, age 74, both hemispheres 173.9
Pretectal area
nTPM: 238.1
2316 Male, age 76, right hemisphere 281.2
2007 Male, age 72, unknown 275.8
1815 Male, age 53, unknown 269.1
1817 Female, age 42, unknown 258.8
1816 Male, age 51, unknown 257.7
2224 Female, age 72, unknown 243.4
2825 Male, age 18, unknown 224.4
1944 Female, age 72, unknown 218.5
2407 Male, age 75, both hemispheres 204.1
2667 Female, age 75, unknown 197.5
2273 Male, age 74, both hemispheres 188.2
Red nucleus
nTPM: 265.3
1821 Female, age 72, unknown 345.4
2503 Female, age 72, unknown 323.6
1865 Male, age 51, unknown 285.6
1904 Male, age 53, unknown 284.1
2725 Female, age 75, unknown 263.2
2588 Male, age 74, left hemisphere 257.5
2769 Male, age 72, unknown 248.5
2227 Male, age 72, unknown 245.8
2584 Male, age 75, left hemisphere 241.1
2785 Male, age 18, unknown 234.9
1954 Female, age 42, unknown 227.3
2823 Male, age 76, right hemisphere 226.9
Substantia nigra
nTPM: 293.9
1851 Male, age 51, unknown 372.8
2241 Male, age 72, unknown 371.2
2409 Female, age 72, unknown 323.3
2699 Male, age 18, unknown 318.5
2665 Male, age 74, both hemispheres 315.6
1916 Female, age 42, unknown 301.4
2590 Female, age 75, unknown 263.6
1889 Female, age 72, unknown 258.0
1941 Male, age 53, unknown 231.3
2583 Male, age 75, right hemisphere 183.8
Superior colliculus
nTPM: 252.3
2587 Male, age 74, left hemisphere 307.8
1913 Female, age 42, unknown 302.9
1995 Male, age 72, unknown 277.4
2668 Female, age 75, unknown 259.6
1895 Male, age 76, right hemisphere 242.1
1796 Male, age 53, unknown 238.8
2664 Male, age 75, both hemispheres 231.5
1839 Male, age 51, unknown 230.7
2261 Male, age 18, unknown 222.4
2087 Female, age 72, unknown 209.5
Ventral tegmental area
nTPM: 267.7
1915 Female, age 42, unknown 327.6
2021 Male, age 53, unknown 281.4
2410 Female, age 72, unknown 273.1
2223 Female, age 72, unknown 272.5
1942 Male, age 51, unknown 236.0
2218 Male, age 76, both hemispheres 215.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1479.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1479.3
Samples: 139

Max nTPM: 4664.5
Min nTPM: 507.6
Std nTPM: 606.5
Median nTPM: 1366.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4664.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3609.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3465.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3104.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2777.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2718.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2550.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2471.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2403.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2390.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2385.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.8
FF:10158-103A5 76 years, female 29.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.4
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 1.4
Sample D Male 0.0
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.4
Sample C Male 0.0
Sample D Male 1.2
Periaqueductal gray
nTPM: 0.9
Samples: 3

Max nTPM: 1.4
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 1.4
Sample D Male 1.3
Superior colliculi
nTPM: 0.7
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.0
Sample A Female 1.2
Sample B Female 0.0
Sample C Male 1.4
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 273.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 273.9
Samples: 4

Max nTPM: 328.0
Min nTPM: 239.5
Sample A Male 328.0
Sample B Male 277.0
Sample C Female 239.5
Sample D Female 251.1

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