MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:39.6 nTPM
GTEx:9.7 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Mouse:113.8 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
2219 Male, age 76, both hemispheres 32.4
1827 Male, age 72, unknown 29.0
2411 Female, age 72, unknown 28.1
1870 Female, age 42, unknown 24.8
2586 Male, age 75, left hemisphere 23.0
1833 Male, age 53, unknown 22.8
2019 Male, age 18, unknown 21.9
2828 Female, age 72, unknown 21.4
1830 Male, age 51, unknown 20.3
2666 Male, age 74, left hemisphere 20.2
Dorsal raphe nucleus
nTPM: 29.1
2298 Female, age 72, unknown 39.8
2047 Male, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 29.0
1828 Male, age 53, unknown 24.0
2016 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 28.4
2097 Female, age 72, unknown 32.5
2849 Male, age 72, unknown 29.6
1848 Female, age 42, unknown 28.4
1890 Male, age 53, unknown 23.1
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Periaquaductal grey, anterior
nTPM: 29.0
1947 Male, age 18, unknown 30.9
1795 Male, age 51, unknown 28.9
2502 Female, age 75, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 26.0
1840 Male, age 53, unknown 33.4
2850 Male, age 76, both hemispheres 24.2
2464 Female, age 72, unknown 23.7
1831 Male, age 72, unknown 22.9
Periaquaductal grey, lateral
nTPM: 22.1
2140 Male, age 76, both hemispheres 23.2
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 21.5
Pretectal area
nTPM: 28.4
2224 Female, age 72, unknown 36.3
2007 Male, age 72, unknown 33.5
2667 Female, age 75, unknown 33.1
1816 Male, age 51, unknown 31.9
1944 Female, age 72, unknown 31.0
1817 Female, age 42, unknown 30.7
1815 Male, age 53, unknown 27.0
2825 Male, age 18, unknown 26.8
2316 Male, age 76, right hemisphere 21.5
2407 Male, age 75, both hemispheres 21.2
2273 Male, age 74, both hemispheres 20.0
Red nucleus
nTPM: 18.2
1821 Female, age 72, unknown 21.5
2785 Male, age 18, unknown 21.4
2725 Female, age 75, unknown 20.7
2584 Male, age 75, left hemisphere 20.6
2588 Male, age 74, left hemisphere 19.1
2823 Male, age 76, right hemisphere 17.9
1954 Female, age 42, unknown 17.4
2769 Male, age 72, unknown 17.4
2227 Male, age 72, unknown 17.3
1904 Male, age 53, unknown 15.6
2503 Female, age 72, unknown 15.4
1865 Male, age 51, unknown 14.2
Substantia nigra
nTPM: 26.0
1916 Female, age 42, unknown 34.2
1941 Male, age 53, unknown 33.4
1889 Female, age 72, unknown 32.1
1851 Male, age 51, unknown 28.7
2241 Male, age 72, unknown 28.3
2665 Male, age 74, both hemispheres 23.4
2590 Female, age 75, unknown 21.2
2699 Male, age 18, unknown 20.9
2409 Female, age 72, unknown 20.7
2583 Male, age 75, right hemisphere 16.9
Superior colliculus
nTPM: 23.7
1895 Male, age 76, right hemisphere 30.1
1796 Male, age 53, unknown 28.6
1839 Male, age 51, unknown 27.5
2087 Female, age 72, unknown 27.0
2261 Male, age 18, unknown 26.1
2587 Male, age 74, left hemisphere 22.7
2664 Male, age 75, both hemispheres 22.5
2668 Female, age 75, unknown 21.7
1913 Female, age 42, unknown 16.1
1995 Male, age 72, unknown 14.0
Ventral tegmental area
nTPM: 28.0
2218 Male, age 76, both hemispheres 35.5
1915 Female, age 42, unknown 30.5
2410 Female, age 72, unknown 28.2
1942 Male, age 51, unknown 26.9
2021 Male, age 53, unknown 23.7
2223 Female, age 72, unknown 23.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 44.4
Min nTPM: 1.6
Std nTPM: 7.8
Median nTPM: 6.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 26.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 25.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 23.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 22.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 119.0
Min nTPM: 109.6
Sample A Male 109.6
Sample B Male 114.9
Sample C Female 119.0
Sample D Female 111.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
69262114 Antisense, RP_050224_01_A11, Mouse strain C57BL/6J (56 days, male) 12.2

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