MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA Brain:23.9 nTPM
GTEx:33.7 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:3.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
2586 Male, age 75, left hemisphere 26.4
2019 Male, age 18, unknown 25.4
1870 Female, age 42, unknown 24.7
2411 Female, age 72, unknown 23.1
1833 Male, age 53, unknown 21.8
2828 Female, age 72, unknown 21.2
2666 Male, age 74, left hemisphere 21.1
1827 Male, age 72, unknown 20.3
1830 Male, age 51, unknown 18.5
2219 Male, age 76, both hemispheres 18.5
Dorsal raphe nucleus
nTPM: 21.0
2298 Female, age 72, unknown 23.2
2016 Female, age 72, unknown 22.3
1828 Male, age 53, unknown 21.8
2750 Male, age 76, both hemispheres 20.6
2047 Male, age 72, unknown 17.4
Inferior colliculus
nTPM: 18.9
2097 Female, age 72, unknown 21.1
1890 Male, age 53, unknown 19.6
2849 Male, age 72, unknown 17.6
1848 Female, age 42, unknown 17.1
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Periaquaductal grey, anterior
nTPM: 18.0
2502 Female, age 75, unknown 19.0
1795 Male, age 51, unknown 18.1
1947 Male, age 18, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 17.3
1831 Male, age 72, unknown 18.1
2464 Female, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 17.2
1840 Male, age 53, unknown 15.8
Periaquaductal grey, lateral
nTPM: 17.1
2272 Male, age 74, both hemispheres 17.9
2053 Male, age 18, unknown 17.8
2140 Male, age 76, both hemispheres 15.7
Pretectal area
nTPM: 20.6
2007 Male, age 72, unknown 24.2
1817 Female, age 42, unknown 23.0
1816 Male, age 51, unknown 22.9
2407 Male, age 75, both hemispheres 22.0
1944 Female, age 72, unknown 21.4
2667 Female, age 75, unknown 20.9
1815 Male, age 53, unknown 19.9
2825 Male, age 18, unknown 19.3
2273 Male, age 74, both hemispheres 19.0
2224 Female, age 72, unknown 18.8
2316 Male, age 76, right hemisphere 14.6
Red nucleus
nTPM: 23.9
1904 Male, age 53, unknown 26.7
1865 Male, age 51, unknown 26.6
2785 Male, age 18, unknown 25.7
1954 Female, age 42, unknown 25.2
2769 Male, age 72, unknown 24.3
2823 Male, age 76, right hemisphere 24.2
2227 Male, age 72, unknown 24.0
2503 Female, age 72, unknown 23.7
2588 Male, age 74, left hemisphere 22.9
1821 Female, age 72, unknown 22.0
2725 Female, age 75, unknown 20.9
2584 Male, age 75, left hemisphere 20.7
Substantia nigra
nTPM: 20.3
2583 Male, age 75, right hemisphere 23.7
1916 Female, age 42, unknown 23.2
1889 Female, age 72, unknown 22.6
1851 Male, age 51, unknown 22.2
2665 Male, age 74, both hemispheres 21.3
2699 Male, age 18, unknown 20.5
1941 Male, age 53, unknown 19.7
2590 Female, age 75, unknown 19.2
2241 Male, age 72, unknown 17.2
2409 Female, age 72, unknown 12.9
Superior colliculus
nTPM: 21.1
1913 Female, age 42, unknown 27.7
1995 Male, age 72, unknown 26.2
2668 Female, age 75, unknown 22.9
1796 Male, age 53, unknown 21.2
2087 Female, age 72, unknown 20.9
2587 Male, age 74, left hemisphere 19.9
2664 Male, age 75, both hemispheres 19.1
1895 Male, age 76, right hemisphere 18.1
2261 Male, age 18, unknown 17.6
1839 Male, age 51, unknown 17.5
Ventral tegmental area
nTPM: 22.6
2223 Female, age 72, unknown 25.2
2218 Male, age 76, both hemispheres 22.9
1942 Male, age 51, unknown 22.6
2410 Female, age 72, unknown 22.3
1915 Female, age 42, unknown 21.6
2021 Male, age 53, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 82.6
Min nTPM: 15.0
Std nTPM: 11.2
Median nTPM: 31.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 82.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 72.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 58.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 58.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 57.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 54.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 51.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.7
Samples: 4

Max nTPM: 60.5
Min nTPM: 44.9
Sample A Female 60.5
Sample B Female 44.9
Sample C Male 45.4
Sample D Male 47.9
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 57.6
Min nTPM: 35.7
Sample A Female 57.6
Sample B Female 55.5
Sample C Male 35.7
Sample D Male 43.8
Periaqueductal gray
nTPM: 43.1
Samples: 3

Max nTPM: 44.1
Min nTPM: 41.3
Sample B Female 44.0
Sample C Male 41.3
Sample D Male 44.1
Superior colliculi
nTPM: 42.7
Samples: 4

Max nTPM: 47.8
Min nTPM: 40.3
Sample A Female 47.8
Sample B Female 40.5
Sample C Male 40.3
Sample D Male 42.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.6
Sample A Male 3.9
Sample B Male 3.2
Sample C Female 2.6
Sample D Female 3.4

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