MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:29.9 nTPM
GTEx:17.9 nTPM
FANTOM5:85.3 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:113.0 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.5
2411 Female, age 72, unknown 29.4
1870 Female, age 42, unknown 28.9
2019 Male, age 18, unknown 25.7
1833 Male, age 53, unknown 25.3
1827 Male, age 72, unknown 23.6
1830 Male, age 51, unknown 22.7
2219 Male, age 76, both hemispheres 22.1
2828 Female, age 72, unknown 20.0
2586 Male, age 75, left hemisphere 19.4
2666 Male, age 74, left hemisphere 17.7
Dorsal raphe nucleus
nTPM: 26.3
2750 Male, age 76, both hemispheres 31.3
2298 Female, age 72, unknown 29.3
1828 Male, age 53, unknown 24.7
2047 Male, age 72, unknown 24.1
2016 Female, age 72, unknown 22.2
Inferior colliculus
nTPM: 23.6
2097 Female, age 72, unknown 29.1
1890 Male, age 53, unknown 23.7
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 18.5
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 22.3
1947 Male, age 18, unknown 23.2
2502 Female, age 75, unknown 22.6
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 21.9
2850 Male, age 76, both hemispheres 25.3
2464 Female, age 72, unknown 22.5
1831 Male, age 72, unknown 22.1
1840 Male, age 53, unknown 17.9
Periaquaductal grey, lateral
nTPM: 21.1
2272 Male, age 74, both hemispheres 22.4
2053 Male, age 18, unknown 20.8
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 26.5
1816 Male, age 51, unknown 31.1
1944 Female, age 72, unknown 31.1
1817 Female, age 42, unknown 30.0
2007 Male, age 72, unknown 29.5
1815 Male, age 53, unknown 29.3
2273 Male, age 74, both hemispheres 29.1
2667 Female, age 75, unknown 27.8
2224 Female, age 72, unknown 24.0
2316 Male, age 76, right hemisphere 21.1
2407 Male, age 75, both hemispheres 19.6
2825 Male, age 18, unknown 18.8
Red nucleus
nTPM: 24.3
1821 Female, age 72, unknown 34.1
1954 Female, age 42, unknown 28.2
1904 Male, age 53, unknown 26.5
1865 Male, age 51, unknown 26.2
2785 Male, age 18, unknown 26.2
2823 Male, age 76, right hemisphere 25.7
2725 Female, age 75, unknown 24.8
2503 Female, age 72, unknown 24.6
2769 Male, age 72, unknown 23.5
2227 Male, age 72, unknown 22.5
2588 Male, age 74, left hemisphere 15.3
2584 Male, age 75, left hemisphere 13.7
Substantia nigra
nTPM: 27.9
1916 Female, age 42, unknown 35.1
2241 Male, age 72, unknown 34.0
1889 Female, age 72, unknown 32.8
1851 Male, age 51, unknown 30.1
1941 Male, age 53, unknown 30.0
2409 Female, age 72, unknown 29.1
2699 Male, age 18, unknown 26.4
2590 Female, age 75, unknown 23.3
2583 Male, age 75, right hemisphere 19.9
2665 Male, age 74, both hemispheres 18.3
Superior colliculus
nTPM: 22.9
2087 Female, age 72, unknown 26.1
2261 Male, age 18, unknown 25.9
1913 Female, age 42, unknown 25.8
1895 Male, age 76, right hemisphere 24.8
2668 Female, age 75, unknown 23.7
1796 Male, age 53, unknown 23.4
1995 Male, age 72, unknown 22.7
2587 Male, age 74, left hemisphere 20.6
1839 Male, age 51, unknown 19.2
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 27.6
2218 Male, age 76, both hemispheres 31.9
2410 Female, age 72, unknown 31.8
2223 Female, age 72, unknown 29.0
1915 Female, age 42, unknown 26.6
1942 Male, age 51, unknown 24.0
2021 Male, age 53, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 38.8
Min nTPM: 2.9
Std nTPM: 5.9
Median nTPM: 17.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 28.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 28.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 28.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 26.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.3
FF:10158-103A5 76 years, female 85.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.4
Samples: 4

Max nTPM: 46.6
Min nTPM: 28.2
Sample A Female 46.6
Sample B Female 29.5
Sample C Male 45.1
Sample D Male 28.2
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 49.1
Min nTPM: 33.0
Sample A Female 35.4
Sample B Female 33.0
Sample C Male 49.1
Sample D Male 40.2
Periaqueductal gray
nTPM: 28.3
Samples: 3

Max nTPM: 30.8
Min nTPM: 26.0
Sample B Female 28.2
Sample C Male 30.8
Sample D Male 26.0
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 50.2
Min nTPM: 31.6
Sample A Female 41.3
Sample B Female 31.6
Sample C Male 50.2
Sample D Male 39.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.0
Samples: 4

Max nTPM: 116.0
Min nTPM: 110.1
Sample A Male 113.0
Sample B Male 110.1
Sample C Female 116.0
Sample D Female 112.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
77620796 Antisense, RP_070129_03_G09, Mouse strain C57BL/6J (56 days, male) 7.7

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