MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:17.4 nTPM
GTEx:26.2 nTPM
FANTOM5:93.1 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:7.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
2666 Male, age 74, left hemisphere 18.3
1870 Female, age 42, unknown 14.0
2019 Male, age 18, unknown 13.6
2828 Female, age 72, unknown 13.6
2411 Female, age 72, unknown 12.2
1830 Male, age 51, unknown 11.2
1833 Male, age 53, unknown 11.2
2586 Male, age 75, left hemisphere 6.8
1827 Male, age 72, unknown 6.4
2219 Male, age 76, both hemispheres 4.2
Dorsal raphe nucleus
nTPM: 10.6
2750 Male, age 76, both hemispheres 14.1
1828 Male, age 53, unknown 12.7
2016 Female, age 72, unknown 10.3
2047 Male, age 72, unknown 8.2
2298 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 12.1
1890 Male, age 53, unknown 14.1
2097 Female, age 72, unknown 14.0
1848 Female, age 42, unknown 12.2
2849 Male, age 72, unknown 8.2
Median raphe nucleus
nTPM: 7.9
2220 Male, age 76, midline 7.9
Periaquaductal grey, anterior
nTPM: 10.6
2502 Female, age 75, unknown 14.3
1947 Male, age 18, unknown 9.6
1795 Male, age 51, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 7.8
1831 Male, age 72, unknown 10.8
2464 Female, age 72, unknown 10.2
1840 Male, age 53, unknown 5.4
2850 Male, age 76, both hemispheres 4.9
Periaquaductal grey, lateral
nTPM: 7.6
2053 Male, age 18, unknown 10.0
2272 Male, age 74, both hemispheres 8.0
2140 Male, age 76, both hemispheres 5.0
Pretectal area
nTPM: 9.8
1817 Female, age 42, unknown 17.6
2007 Male, age 72, unknown 12.5
1815 Male, age 53, unknown 12.2
1944 Female, age 72, unknown 10.7
2667 Female, age 75, unknown 10.1
1816 Male, age 51, unknown 9.7
2316 Male, age 76, right hemisphere 9.3
2224 Female, age 72, unknown 8.9
2825 Male, age 18, unknown 8.0
2273 Male, age 74, both hemispheres 5.2
2407 Male, age 75, both hemispheres 4.0
Red nucleus
nTPM: 17.4
1821 Female, age 72, unknown 27.4
1954 Female, age 42, unknown 24.4
1904 Male, age 53, unknown 20.4
2769 Male, age 72, unknown 19.4
2503 Female, age 72, unknown 19.1
2588 Male, age 74, left hemisphere 19.0
2227 Male, age 72, unknown 17.4
2823 Male, age 76, right hemisphere 16.2
2785 Male, age 18, unknown 13.6
1865 Male, age 51, unknown 13.1
2725 Female, age 75, unknown 12.2
2584 Male, age 75, left hemisphere 6.6
Substantia nigra
nTPM: 15.0
2665 Male, age 74, both hemispheres 40.6
1851 Male, age 51, unknown 18.3
1916 Female, age 42, unknown 15.1
2241 Male, age 72, unknown 15.1
1889 Female, age 72, unknown 12.5
2409 Female, age 72, unknown 12.5
2699 Male, age 18, unknown 12.2
2590 Female, age 75, unknown 10.3
1941 Male, age 53, unknown 7.4
2583 Male, age 75, right hemisphere 5.9
Superior colliculus
nTPM: 10.0
2587 Male, age 74, left hemisphere 15.3
2087 Female, age 72, unknown 14.7
2668 Female, age 75, unknown 10.8
1839 Male, age 51, unknown 10.3
1913 Female, age 42, unknown 9.9
1995 Male, age 72, unknown 9.9
1895 Male, age 76, right hemisphere 9.0
1796 Male, age 53, unknown 8.8
2261 Male, age 18, unknown 8.7
2664 Male, age 75, both hemispheres 3.0
Ventral tegmental area
nTPM: 13.4
2410 Female, age 72, unknown 14.8
2218 Male, age 76, both hemispheres 14.5
1915 Female, age 42, unknown 13.6
2021 Male, age 53, unknown 13.4
1942 Male, age 51, unknown 12.6
2223 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 191.6
Min nTPM: 1.8
Std nTPM: 27.5
Median nTPM: 18.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 191.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 161.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 108.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 100.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 98.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 95.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 81.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 80.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 70.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 69.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 64.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.1
FF:10158-103A5 76 years, female 93.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 16.4
Min nTPM: 6.6
Sample A Female 10.0
Sample B Female 16.4
Sample C Male 9.2
Sample D Male 6.6
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 8.3
Min nTPM: 3.9
Sample A Female 8.3
Sample B Female 4.6
Sample C Male 8.0
Sample D Male 3.9
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 5.4
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 5.4
Sample D Male 3.4
Superior colliculi
nTPM: 13.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 7.2
Sample A Female 16.4
Sample B Female 20.2
Sample C Male 8.0
Sample D Male 7.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.4
Sample A Male 7.2
Sample B Male 6.4
Sample C Female 9.2
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69980316 Antisense, RP_050512_04_C10, Mouse strain C57BL/6J (56 days, male) 0.5

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