MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:92.9 nTPM
GTEx:10.4 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:13.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.4
2586 Male, age 75, left hemisphere 110.2
2828 Female, age 72, unknown 75.0
2019 Male, age 18, unknown 70.9
2666 Male, age 74, left hemisphere 67.5
1827 Male, age 72, unknown 53.8
2411 Female, age 72, unknown 32.3
1870 Female, age 42, unknown 29.9
1830 Male, age 51, unknown 22.8
2219 Male, age 76, both hemispheres 20.9
1833 Male, age 53, unknown 20.7
Dorsal raphe nucleus
nTPM: 28.7
2047 Male, age 72, unknown 33.6
2298 Female, age 72, unknown 33.2
1828 Male, age 53, unknown 31.3
2016 Female, age 72, unknown 23.6
2750 Male, age 76, both hemispheres 21.9
Inferior colliculus
nTPM: 20.0
1848 Female, age 42, unknown 23.9
2849 Male, age 72, unknown 22.1
1890 Male, age 53, unknown 18.2
2097 Female, age 72, unknown 15.7
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Periaquaductal grey, anterior
nTPM: 60.4
1795 Male, age 51, unknown 85.7
2502 Female, age 75, unknown 53.5
1947 Male, age 18, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 42.1
1831 Male, age 72, unknown 57.5
2464 Female, age 72, unknown 41.7
2850 Male, age 76, both hemispheres 35.0
1840 Male, age 53, unknown 34.2
Periaquaductal grey, lateral
nTPM: 38.0
2053 Male, age 18, unknown 42.7
2140 Male, age 76, both hemispheres 41.1
2272 Male, age 74, both hemispheres 30.1
Pretectal area
nTPM: 92.9
1816 Male, age 51, unknown 214.9
1817 Female, age 42, unknown 156.7
1944 Female, age 72, unknown 147.0
2007 Male, age 72, unknown 141.3
1815 Male, age 53, unknown 136.2
2667 Female, age 75, unknown 54.1
2407 Male, age 75, both hemispheres 48.2
2224 Female, age 72, unknown 36.1
2273 Male, age 74, both hemispheres 29.7
2316 Male, age 76, right hemisphere 29.0
2825 Male, age 18, unknown 28.3
Red nucleus
nTPM: 30.2
2785 Male, age 18, unknown 73.1
2725 Female, age 75, unknown 52.0
2584 Male, age 75, left hemisphere 47.3
2588 Male, age 74, left hemisphere 44.7
2503 Female, age 72, unknown 28.7
2823 Male, age 76, right hemisphere 23.1
1865 Male, age 51, unknown 19.0
1954 Female, age 42, unknown 16.3
1904 Male, age 53, unknown 15.3
2769 Male, age 72, unknown 15.0
2227 Male, age 72, unknown 14.5
1821 Female, age 72, unknown 13.6
Substantia nigra
nTPM: 35.5
1889 Female, age 72, unknown 82.6
1941 Male, age 53, unknown 65.8
2665 Male, age 74, both hemispheres 45.2
2583 Male, age 75, right hemisphere 35.2
2590 Female, age 75, unknown 34.9
2409 Female, age 72, unknown 26.8
1851 Male, age 51, unknown 21.6
1916 Female, age 42, unknown 16.8
2699 Male, age 18, unknown 13.1
2241 Male, age 72, unknown 12.5
Superior colliculus
nTPM: 65.0
2087 Female, age 72, unknown 116.8
2664 Male, age 75, both hemispheres 91.3
1995 Male, age 72, unknown 83.7
1913 Female, age 42, unknown 83.1
2261 Male, age 18, unknown 82.3
1796 Male, age 53, unknown 58.8
2587 Male, age 74, left hemisphere 40.1
2668 Female, age 75, unknown 34.7
1839 Male, age 51, unknown 34.2
1895 Male, age 76, right hemisphere 25.1
Ventral tegmental area
nTPM: 23.8
1942 Male, age 51, unknown 29.8
2410 Female, age 72, unknown 25.8
2223 Female, age 72, unknown 25.6
2218 Male, age 76, both hemispheres 22.0
2021 Male, age 53, unknown 21.5
1915 Female, age 42, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 51.5
Min nTPM: 1.4
Std nTPM: 6.9
Median nTPM: 8.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 29.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 25.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 23.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 20.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 20.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.5
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 2.9
Sample C Male 2.2
Sample D Male 3.2
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 2.0
Sample A Female 3.1
Sample B Female 2.0
Sample C Male 16.7
Sample D Male 2.6
Periaqueductal gray
nTPM: 2.3
Samples: 3

Max nTPM: 2.5
Min nTPM: 2.1
Sample B Female 2.1
Sample C Male 2.5
Sample D Male 2.4
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 3.0
Sample C Male 6.2
Sample D Male 4.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 13.9
Min nTPM: 12.3
Sample A Male 13.9
Sample B Male 12.3
Sample C Female 13.9
Sample D Female 13.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69444789 Antisense, RP_050414_04_F05, Mouse strain C57BL/6J (56 days, male) 2.8
72340183 Antisense, RP_051101_02_B04, Mouse strain C57BL/6J (56 days, male) 0.6
73808528 Antisense, RP_051212_03_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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